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Ultra-sensitive and Multiplex Detection of Clinical Biomarkers Using a SPRi-based Sensor

Ultra-sensitive and Multiplex Detection of Clinical Biomarkers Using a SPRi-based Sensor
Author: Effat Zeidan
Publisher:
Total Pages: 91
Release: 2016
Genre: Biochemical markers
ISBN:

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"Reliable and reproducible biomarker analysis is the main focus of current clinical diagnostic approaches being developed for the sensitive detection and quantification of biomarkers in bodily fluids. Currently used tools are being revised for better analytical performance that overcomes the drawbacks of inaccurate results. Surface plasmon resonance imaging is rising quickly as an affinity-based optical biosensor that demonstrates numerous improvements to the sensor surface design and sensitivity for label-free and real-time biomarker analysis. In this work, our goal is to develop a more sensitive analytical method for the enhanced detection of the human growth hormone (hGH) in serum, multiplex detection of disease biomarkers (KIM-1 and HMGB-1) simultaneously in buffer using a sandwich-amplification assay, and small molecule-progesterone sensing using a novel aptasensor. Our goals were met by ensuring a homogenous and specific immunosensor for detecting hGH at very low concentrations (>9.1 pg/mL), substituting random antibody attachment with a site directed immobilization to the sensor surface for multiplex detection of two disease biomarkers down to 5 pg/mL levels in buffer, and further increasing the sensitivity of progesterone biosensor by exploiting x-aptamer technology for highly selective detection of progesterone (> 1 nM) in buffer."--Abstract from author supplied metadata. [This abstract has been edited to remove characters that will not display in this system. Please see the PDF for the full abstract.]


Next Generation Point-of-care Biomedical Sensors Technologies for Cancer Diagnosis

Next Generation Point-of-care Biomedical Sensors Technologies for Cancer Diagnosis
Author: Pranjal Chandra
Publisher: Springer
Total Pages: 403
Release: 2017-12-30
Genre: Medical
ISBN: 981104726X

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This book presents recent research on cancer detection methods based on nanobiosensors, which offer ultrasensitive point-of-care diagnosis. Several methods for diagnosing cancer have been discovered and many more are currently being developed. Conventional clinical approaches to detecting cancers are based on a biopsy followed by histopathology, or on the use of biomarkers (protein levels or nucleic acid content). Biopsy is the most widely used technique; however, it is an invasive technique and is not always applicable. Furthermore, biomarker-based detection cannot be relied on when the biomarkers are present in an extremely low concentration in the body fluids and in malignant tissues. Thus, in recent years highly sensitive and robust new cancer diagnosis techniques have been developed for clinical application, and may offer an alternative strategy for cancer diagnosis. As such, this book gathers the latest point-of-care cancer diagnostic methods and protocols based on biomedical sensors, microfluidics, and integrated systems engineering. It also discusses recent developments and diagnostics tests that can be conducted outside the laboratory in remote areas. These technologies include electrochemical sensors, paper-based microfluidics, and other kit-based diagnostic methods that can be adapted to bring cancer detection and diagnostics to more remote settings around the globe. Overall, the book provides students, researchers, and clinicians alike a comprehensive overview of interdisciplinary approaches to cancer diagnosis.


Enzymatic Amplification for Ultrasensitive Biomarker Detection Using Surface Plasmon Resonance Imaging

Enzymatic Amplification for Ultrasensitive Biomarker Detection Using Surface Plasmon Resonance Imaging
Author: Yu-Lin Chen
Publisher:
Total Pages: 158
Release: 2012
Genre:
ISBN: 9781267826800

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The field of clinical diagnostics calls for novel, ultrasensitive detection of biomarkers at femtomolar concentrations, which requires beyond the typical limit of florescence-based enzyme-linked immunosorbent assays (ELISA). Surface plasmon resonance imaging (SPRI), in conjunction with surface enzymatic amplification, serves as a highly suitable detection method of biomolecules at such low concentration levels. The fundamental but crucial step of surface enzymatic amplification on both planar substrates and nanoparticle surfaces is to develop a bioactive surface attachment chemistry with the properties of high fidelity, reliability and reproducibility; hereby a newly developed pGlu surface attachment used for both DNA microarrays and DNA-coated silica nanoparticles is mentioned in all chapters and in Appendix A. The application of using this pGlu attachment on DNA microarrays is combined with the piezoelectrically-driven micromixer as demonstrated in Chapter 2. In Chaper 3-5, the dissertation is focused on using surface enzymatic methods in order to enhance the sensitivity, specificity and applicability of multiplexed biomarker detections, such as microRNA and biomarker proteins. One technique involves an enzymatic capture reaction (T4 ligation) on DNA-modified silica nanoparticles, which drives multiplexed microRNA detection by SPRI toward higher sensitivity as described in Chapter 3. On-chip multiplexed ssRNA synthesis by T7 RNA polymerase, in order to generate self-adsorbed RNA aptamer microarrays for protein biosensing, is demonstrated in Chapter 4. In Chapter 5, another approach used to advance SPRI detection utilizes the concept of "DNAzyme footprinting", in conjugation with transcription amplification and nanoparticle-enhanced measurements in order to reach a SPRI detection limit of human throbin as low as 100 femtomolar.


The Detection of Biomarkers

The Detection of Biomarkers
Author: Sibel A. Ozkan
Publisher: Academic Press
Total Pages: 615
Release: 2021-12-05
Genre: Medical
ISBN: 0128230754

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Reliable, precise and accurate detection and analysis of biomarkers remains a significant challenge for clinical researchers. Methods for the detection of biomarkers are rather complex, requiring pre-treatment steps before analysis can take place. Moreover, comparing various biomarker assays and tracing research progress in this area systematically is a challenge for researchers. The Detection of Biomarkers presents developments in biomarker detection, including methods tools and strategies, biosensor design, materials, and applications. The book presents methods, materials and procedures that are simple, precise, sensitive, selective, fast and economical, and therefore highly practical for use in clinical research scenarios. This volume situates biomarker detection in its research context and sets out future prospects for the area. Its 20 chapters offer a comprehensive coverage of biomarkers, including progress on nanotechnology, biosensor types, synthesis, immobilization, and applications in various fields. The book also demonstrates, for students, how to synthesize and immobilize biosensors for biomarker assay. It offers researchers real alternative and innovative ways to think about the field of biomarker detection, increasing the reliability, precision and accuracy of biomarker detection. Locates biomarker detection in its research context, setting out present and future prospects Allows clinical researchers to compare various biomarker assays systematically Presents new methods, materials and procedures that are simple, precise, sensitive, selective, fast and economical Gives innovative biomarker assays that are viable alternatives to current complex methods Helps clinical researchers who need reliable, precise and accurate biomarker detection methods


Quantitative Multiplex Detection of Biomarkers on a Waveguide-based Biosensor Using Quantum Dots

Quantitative Multiplex Detection of Biomarkers on a Waveguide-based Biosensor Using Quantum Dots
Author:
Publisher:
Total Pages:
Release: 2009
Genre:
ISBN:

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The quantitative, simultaneous detection of multiple biomarkers with high sensitivity and specificity is critical for biomedical diagnostics, drug discovery and biomarker characterization [Wilson 2006, Tok 2006, Straub 2005, Joos 2002, Jani 2000]. Detection systems relying on optical signal transduction are, in general, advantageous because they are fast, portable, inexpensive, sensitive, and have the potential for multiplex detection of analytes of interest. However, conventional immunoassays for the detection of biomarkers, such as the Enzyme Linked Immunosorbant Assays (ELISAs) are semi-quantitative, time consuming and insensitive. ELISA assays are also limited by high non-specific binding, especially when used with complex biological samples such as serum and urine (REF). Organic fluorophores that are commonly used in such applications lack photostability and possess a narrow Stoke's shift that makes simultaneous detection of multiple fluorophores with a single excitation source difficult, thereby restricting their use in multiplex assays. The above limitations with traditional assay platforms have resulted in the increased use of nanotechnology-based tools and techniques in the fields of medical imaging [ref], targeted drug delivery [Caruthers 2007, Liu 2007], and sensing [ref]. One such area of increasing interest is the use of semiconductor quantum dots (QDs) for biomedical research and diagnostics [Gao and Cui 2004, Voura 2004, Michalet 2005, Chan 2002, Jaiswal 2004, Gao 2005, Medintz 2005, So 2006 2006, Wu 2003]. Compared to organic dyes, QDs provide several advantages for use in immunoassay platforms, including broad absorption bands with high extinction coefficients, narrow and symmetric emission bands with high quantum yields, high photostablility, and a large Stokes shift [Michalet 2005, Gu 2002]. These features prompted the use of QDs as probes in biodetection [Michalet 2005, Medintz 2005]. For example, Jaiswal et al. reported long term multiple color imaging of live cells using QD-bioconjugates [Jaiswal 2003]. Gao [Gao 2004] and So [So 2006] have used QDs as probes for in-vivo cancer targeting and imaging. Medintz et al. reported self-assembled QD-based biosensors for detection of analytes based on energy transfer [Medintz 2003]. Others have developed an approach for multiplex optical encoding of biomolecules using QDs [Han 2001]. Immunoassays have also benefited from the advantages of QDs. Recently, dihydrolipoic acid (DHLA) capped-QDs have been attached to antibodies and used as fluorescence reporters in plate-based multiplex immunoassays [Goodman 2004]. However, DHLA-QDs are associated with low quantum efficiency and are unstable at neutral pH. These problems limit the application of this technology to the sensitive detection of biomolecules, especially in complex biological samples. Thus, the development of a rapid, sensitive, quantitative, and specific multiplex platform for the detection of biomarkers in difficult samples remains an elusive target. The goal stated above has applications in many fields including medical diagnostics, biological research, and threat reduction. The current decade alone has seen the development of a need to rapidly and accurately detect potential biological warfare agents. For example, current methods for the detection of anthrax are grossly inadequate for a variety of reasons including long incubation time (5 days from time of exposure to onset of symptoms) and non-specific ('flu-like') symptoms. When five employees of the United State Senate were exposed to B. anthracis in the mail (2001), only one patient had a confirmed diagnosis before death. Since then, sandwich immunoassays using both colorimetric and fluorescence detectors have been developed for key components of the anthrax lethal toxin, namely protective antigen (PA), lethal factor (LF), and the edema factor [Mourez 2001]. While these platforms were successful in assays against anthrax toxins, the sensitivity was poor. Furthermore, no single platform exists for the simultaneous and quantitative detection of multiple components of the B. anthracis toxin. Addressing multiple biomarkers at the same time will increase confidence in a positive result, and may lead to application in the simultaneous detection of anthrax and other biowarfare agents.


Enhancing the Limit of Detection of Biomarkers in Serum Using a SPRi Nano-aptasensor

Enhancing the Limit of Detection of Biomarkers in Serum Using a SPRi Nano-aptasensor
Author: Stephen Vance
Publisher:
Total Pages: 106
Release: 2015
Genre: Biochemical markers
ISBN:

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"Surface Plasmon Resonance imaging (SPRi) is a label-free, ultrasensitive detection method for monitoring biomolecular interactions in real-time with high throughput. Diagnostic biomarkers for cancer, cardiovascular disease, and Alzheimer's disease are often in low abundance in serum, presenting many challenges for their detection. SPRi has great potential as a diagnostic tool because its limit of detection (LOD) for many biomarkers falls in the nanogram per milliliter range, but in order to further enhance its usefulness, its LOD must be reduced to even lower concentrations. We have developed a detection scheme that improves SPRi sensitivity by several orders of magnitude. This increase in sensitivity relies upon the integration of SPRi with nanomaterials and microwave-assisted surface functionalization. This approach makes it possible for the SPRi biosensor to detect C-reactive protein in spiked human serum at concentrations of 5 fg/ml or 45 zeptomole. This scheme was then compared to commercial ELISA kits for the detection of human Growth Hormone, which has a LOD of 1 ng/ml. In order to directly compare the two platforms the antibody sandwich assay was copied in the SPRi scheme and with nanomaterial enhancement, an LOD of 9.2 pg/ml was achieved."--Abstract from author supplied metadata.


A Multiplexing Immunosensor for the Quantification of Cytokine Biomarkers

A Multiplexing Immunosensor for the Quantification of Cytokine Biomarkers
Author: Aaron Fairchild
Publisher:
Total Pages: 150
Release: 2012
Genre: Biochemical markers
ISBN:

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Biosensors offer excellent diagnostic methods through precise quantification of bodily fluid biomarkers and could fill an important niche in diagnostic screening. The long term goal of this research is the development of an impedance immunosensor for easy-to-use, rapid, sensitive and selective simultaneously multiplexed quantification of bodily fluid disease biomarkers. To test the hypothesis that various cytokines induce empirically determinable response frequencies when captured by printed circuit board (PCB) impedance immunosensor surface, cyclic voltammetry (CV) and electrochemical impedance spectroscopy (EIS) methods were used to test PCB biosensors versus multiple cytokine biomarkers to determine limits of detection, background interaction and response at all sweep frequencies. Results indicated that sensors for cytokine Interleukin-12 (IL-12) detected their target over three decades of concentration and were tolerant to high levels of background protein. Further, the hypothesis that cytokine analytes may be rapidly detected via constant frequency impedance immunosensing without sacrificing undue sensitivity, CV, EIS, impedance-time (Zt) methods and modeling were used to test CHITM gold electrodes versus IL-12 over different lengths of time to determine limits of detection, detection time, frequency of response and consistent cross-platform sensor performance. Modeling and Zt studies indicate interrogation of the electrode with optimum frequency could be used for detection of different target concentrations within 90 seconds of sensor exposure and that interrogating the immunosensor with fixed, optimum frequency could be used for sensing target antigen. This informs usability of fixed-frequency impedance methods for biosensor research and particularly for clinical biosensor use. Finally, a multiplexing impedance immunosensor prototype for quantification of biomarkers in various body fluids was designed for increased automation of sample handling and testing. This enables variability due to exogenous factors and increased rapidity of assay with eased sensor fabrication. Methods were provided for simultaneous multiplexing through multisine perturbation of a sensor, and subsequent data processing. This demonstrated ways to observe multiple types of antibody-antigen affinity binding events in real time, reducing the number of sensors and target sample used in the detection and quantification of multiple biomarkers. These features would also improve the suitability of the sensor for clinical multiplex detection of disease biomarkers.


Inflammation and Biomarkers in Osteoarthritis

Inflammation and Biomarkers in Osteoarthritis
Author: Francisco Airton Castro Rocha
Publisher: Frontiers Media SA
Total Pages: 124
Release: 2021-09-23
Genre: Medical
ISBN: 2889713385

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Sensitive Multi-Photon Laser Wave-Mixing Detection Methods Interfaced to Microfluidics for Cancer Biomarkers Using Thin Samples

Sensitive Multi-Photon Laser Wave-Mixing Detection Methods Interfaced to Microfluidics for Cancer Biomarkers Using Thin Samples
Author: Jie Liang
Publisher:
Total Pages: 0
Release: 2023
Genre:
ISBN:

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Nonlinear laser wave mixing is presented as a highly sensitive absorption-based detection method for biomarkers in a capillary electrophoresis system, and on glass surfaces or microscope slides. It offers significant advantages, including outstanding sensitivity and selectivity levels, high spatial resolution, small sample volume requirement, small probe volume (nL to pL), and portable and compact designs. Different laser wave-mixing detectors can be interfaced to capillary electrophoresis systems for enhanced chemical selectivity and microscope glass slides for inexpensive and fast detection of millimeter-thin samples.Laser wave-mixing detection interfaced with capillary electrophoresis further enhances detection sensitivity by on-line sample concentration methods. Selectivity levels are improved by separating excess labels or dyes from dye-conjugated proteins. Different modes of capillary electrophoresis can be used to separate proteins and biomarkers, including capillary zone electrophoresis, micellar electrokinetic chromatography, and capillary sieving electrophoresis. Since wave mixing is an absorption-based detection method, one can use both fluorophores and chromophores to label proteins and biomarkers. For example, Chromeo P503 and Chromeo P540 are used to label pancreatic cancer biomarker CA 19-9 with the optimal molar ratio of dye to protein. The concentration and mass detection limits for CA 19-9 are determined to be 0.0090 U/mL and 6.8 x 10-10 U, respectively. Colorimetric assays (Bradford assay and BCA assay) are used to quantify CA 19-9, and the corresponding concentration and mass detection limits for CA 19-9 are determined to be 75 pM (picomolar) and 5.6 zeptomole, respectively. This study also demonstrates ultrasensitive detection of biomarkers held between microscope glass slides or air-dried on a microscope slide for convenient and fast detection of biomarkers and viruses. Preliminary concentration and mass detection limits are determined to be 160 U/mL and 680 attomole for CA 19-9; 40 ng/mL and 91 zeptomole for human epidermal growth factor receptor 2; and 125 pg/mL and 1 zeptomole for HIV-1 p24 antigen.