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Theoretical and Computational Studies of the Lateral Phases on a Multicomponent Lipid-bilayer Surface

Theoretical and Computational Studies of the Lateral Phases on a Multicomponent Lipid-bilayer Surface
Author: Yongtian Luo
Publisher:
Total Pages: 120
Release: 2019
Genre:
ISBN:

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The lipid-bilayer membrane is the fundamental structure of a cell plasma membrane and has been largely studied by biophysical experiments, theoretical modeling and computer simulations. Two major aspects of lipid bilayer morphologies are studied, namely lateral phase separation and pattern formation (spatial organization of lipid molecules), and shape change or deformation of the membrane (undulation of the surface). In this dissertation, I apply theoretical modeling, analytical and numerical computation as well as molecular simulation to study the lateral phases on the surface of a multicomponent lipid bilayer, which is able to stay in a homogeneous state, phase separate, or transform into heterogeneous states including modulated phases and microemulsions. The focal point is a lipid-bilayer vesicle of finite size and spherical topology. I calculate phase diagrams which reveal the effects of intrinsic finite sizes of vesicles on their surface pattern and lateral phase generation. I also calculate the structure factor of vesicles, which is measured by scattering signals, and theoretically develop an approximate model-independent interconversion between the three-dimensional signal and the two-dimensional structure factor of planar membranes, and I also stress the finite size effect in this relation. It is also observed that the lipid domain formation is coupled with membrane curvature distribution on the surface. I apply the coupling through domain bending properties, and create phase diagrams in which changing membrane mechanical properties can vary the lateral phases on a vesicle surface. In addition to the aforementioned continuum modeling, I also utilize coarse-grained molecular dynamics simulation to explore the phase behavior of asymmetric lipid bilayers consisting of a phase-separating leaflet and a homogeneous leaflet, in which the former would induce a tendency of phase separation in the latter. The molecular simulation, which keeps a record of each lipid molecule, could be a more biologically relevant model of plasma membranes.


The Role of Mechanics in the Study of Lipid Bilayers

The Role of Mechanics in the Study of Lipid Bilayers
Author: David J. Steigmann
Publisher: Springer
Total Pages: 338
Release: 2017-05-23
Genre: Science
ISBN: 3319563483

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This book is the first collection of lipid-membrane research conducted by leading mechanicians and experts in continuum mechanics. It brings the overall intellectual framework afforded by modern continuum mechanics to bear on a host of challenging problems in lipid membrane physics. These include unique and authoritative treatments of differential geometry, shape elasticity, surface flow and diffusion, interleaf membrane friction, phase transitions, electroelasticity and flexoelectricity, and computational modelling.


Advances in Planar Lipid Bilayers and Liposomes

Advances in Planar Lipid Bilayers and Liposomes
Author: A. Ottova-Leitmannova
Publisher: Gulf Professional Publishing
Total Pages: 348
Release: 2005-09
Genre: Mathematics
ISBN: 9780123694539

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The lipid bilayer is central to life, as all living organisms possess a lipid bilayer structure, thereby underlying the lipid bilayer principle of biomembranes. The lipid bilayer principle and its applications are the main theme of this new book series. This new series on bilayer lipid membranes (BLMs and liposomes) include invited chapters on a broad range of topics, from theoretical investigations, specific studies, experimental methods, to practical applications. Written for newcomers, experienced scientists, and those who are not familiar with these specific research areas, the Series covers all aspects of lipid bilayer investigations, both fundamental and applied. * Covers a broad range of topics ranging from theoretical research, specific studies, experimental methods, to practical applications * Authoritative timely reviews by experts in this field * Indispensable source of information for new scientists


Lipid Domains

Lipid Domains
Author:
Publisher: Academic Press
Total Pages: 393
Release: 2015-06-08
Genre: Science
ISBN: 0128033274

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Current Topics in Membranes is targeted toward scientists and researchers in biochemistry and molecular and cellular biology, providing the necessary membrane research to assist them in discovering the current state of a particular field and in learning where that field is heading. This volume offers an up to date presentation of current knowledge in the field of Lipid Domains. Written by leading experts Contains original material, both textual and illustrative, that should become a very relevant reference material The material is presented in a very comprehensive manner Both researchers in the field and general readers should find relevant and up-to-date information


Geometrically Unfitted Finite Element Methods and Applications

Geometrically Unfitted Finite Element Methods and Applications
Author: Stéphane P. A. Bordas
Publisher: Springer
Total Pages: 371
Release: 2018-03-13
Genre: Mathematics
ISBN: 3319714317

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This book provides a snapshot of the state of the art of the rapidly evolving field of integration of geometric data in finite element computations. The contributions to this volume, based on research presented at the UCL workshop on the topic in January 2016, include three review papers on core topics such as fictitious domain methods for elasticity, trace finite element methods for partial differential equations defined on surfaces, and Nitsche’s method for contact problems. Five chapters present original research articles on related theoretical topics, including Lagrange multiplier methods, interface problems, bulk-surface coupling, and approximation of partial differential equations on moving domains. Finally, two chapters discuss advanced applications such as crack propagation or flow in fractured poroelastic media. This is the first volume that provides a comprehensive overview of the field of unfitted finite element methods, including recent techniques such as cutFEM, traceFEM, ghost penalty, and augmented Lagrangian techniques. It is aimed at researchers in applied mathematics, scientific computing or computational engineering.


The Giant Vesicle Book

The Giant Vesicle Book
Author: Rumiana Dimova
Publisher: CRC Press
Total Pages: 1144
Release: 2019-11-19
Genre: Science
ISBN: 1351648551

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Giant vesicles are widely used as a model membrane system, both for basic biological systems and for their promising applications in the development of smart materials and cell mimetics, as well as in driving new technologies in synthetic biology and for the cosmetics and pharmaceutical industry. The reader is guided to use giant vesicles, from the formation of simple membrane platforms to advanced membrane and cell system models. It also includes fundamentals for understanding lipid or polymer membrane structure, properties and behavior. Every chapter includes ideas for further applications and discussions on the implications of the observed phenomena towards understanding membrane-related processes. The Giant Vesicle Book is meant to be a road companion, a trusted guide for those making their first steps in this field as well as a source of information required by experts. Key Features • A complete summary of the field, covering fundamental concepts, practical methods, core theory, and the most promising applications • A start-up package of theoretical and experimental information for newcomers in the field • Extensive protocols for establishing the required preparations and assays • Tips and instructions for carefully performing and interpreting measurements with giant vesicles or for observing them, including pitfalls • Approaches developed for investigating giant vesicles as well as brief overviews of previous studies implementing the described techniques • Handy tables with data and structures for ready reference


Advances in Planar Lipid Bilayers and Liposomes

Advances in Planar Lipid Bilayers and Liposomes
Author: Ales Iglic
Publisher: Academic Press
Total Pages: 358
Release: 2012-09-04
Genre: Medical
ISBN: 0123965349

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Advances in Planar Lipid Bilayers and Liposomes volumes cover a broad range of topics, including main arrangements of the reconstituted system, namely planar lipid bilayers as well as spherical liposomes. The invited authors present the latest results of their own research groups in this exciting multidisciplinary field. Incorporates contributions from newcomers and established and experienced researchers Explores the planar lipid bilayer systems and spherical liposomes from both theoretical and experimental perspectives Serves as an indispensable source of information for new scientists


Environmentally Degradable Materials Based on Multicomponent Polymeric Systems

Environmentally Degradable Materials Based on Multicomponent Polymeric Systems
Author: Cornelia Vasile
Publisher: BRILL
Total Pages: 660
Release: 2009-12-21
Genre: Technology & Engineering
ISBN: 9004164103

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Environmentally Degradable Materials (EDPs) should replace petroleum-based plastics where recycling is not viable for logistic or labor cost reason. This book discusses the general background of obtaining such systems, compatibilization methodologies, control of the rate of degradation and final products after degradation, life time assessment, toxicological aspects, applications and market aspects. This book is a complete guide to the subject of biodegradable materials based on multi-component polymeric systems, mainly such as hydrogels, and interpenetrating polymeric networks. This book is a complete guide to the subject of biodegradable materials based on multicomponent polymeric systems such as mainly hydrogels, interpenetrating polymeric networks.


Statistical Thermodynamics Of Surfaces, Interfaces, And Membranes

Statistical Thermodynamics Of Surfaces, Interfaces, And Membranes
Author: Samuel Safran
Publisher: CRC Press
Total Pages: 204
Release: 2018-03-08
Genre: Science
ISBN: 0429976763

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Understanding the structural and thermodynamic properties of surfaces, interfaces, and membranes is important for both fundamental and practical reasons. Important applications include coatings, dispersants, encapsulating agents, and biological materials. Soft materials, important in the development of new materials and the basis of many biological systems, cannot be designed using trial and error methods due to the multiplicity of components and parameters. While these systems can sometimes be analyzed in terms of microscopic mixtures, it is often conceptually simpler to regard them as dispersions and to focus on the properties of the internal interfaces found in these systems. The basic physics centers on the properties of quasi-two-dimensional systems embedded in the three-dimensional world, thus exhibiting phenomena that do not exist in bulk materials. This approach is the basis behind the theoretical presentation of Statistical Thermodynamics of Surfaces, Interfaces, and Membranes. The approach adapted allows one to treat the rich diversity of phenomena investigated in the field of soft matter physics (including both colloid/interface science as well as the materials and macromolecular aspects of biological physics) such as interfacial tension, the roughening transition, wetting, interactions between surfaces, membrane elasticity, and self-assembly. Presented as a set of lecture notes, this book is aimed at physicists, physical chemists, biological physicists, chemical engineers, and materials scientists who are interested in the statistical mechanics that underlie the macroscopic, thermodynamic properties of surfaces, interfaces, and membranes. This paperback edition contains all the material published in the original hard-cover edition as well as additional clarifications and explanations.


Structure and Dynamics of Membranes

Structure and Dynamics of Membranes
Author: R. Lipowsky
Publisher: Elsevier
Total Pages: 537
Release: 1995-06-15
Genre: Technology & Engineering
ISBN: 0080541917

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The first volume of the Handbook deals with the amazing world of biomembranes and lipid bilayers. Part A describes all aspects related to the morphology of these membranes, beginning with the complex architecture of biomembranes, continues with a description of the bizarre morphology of lipid bilayers and concludes with technological applications of these membranes. The first two chapters deal with biomembranes, providing an introduction to the membranes of eucaryotes and a description of the evolution of membranes. The following chapters are concerned with different aspects of lipids including the physical properties of model membranes composed of lipid-protein mixtures, lateralphase separation of lipids and proteins and measurement of lipid-protein bilayer diffusion. Other chapters deal with the flexibility of fluid bilayers, the closure of bilayers into vesicles which attain a large variety of different shapes, and applications of lipid vesicles and liposomes. Part B covers membrane adhesion, membrane fusion and the interaction of biomembranes withpolymer networks such as the cytoskeleton. The first two chapters of this part discuss the generic interactions of membranes from the conceptual point of view. The following two chapters summarize the experimental work on two different bilayer systems. The next chapter deals with the process ofcontact formation, focal bounding and macroscopic contacts between cells. The cytoskeleton within eucaryotic cells consists of a network of relatively stiff filaments of which three different types of filaments have been identified. As explained in the next chapter much has been recently learned aboutthe interaction of these filaments with the cell membrane. The final two chapters deal with membrane fusion.