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The Art of High Performance Computing for Computational Science, Vol. 1

The Art of High Performance Computing for Computational Science, Vol. 1
Author: Masaaki Geshi
Publisher: Springer
Total Pages: 219
Release: 2019-05-14
Genre: Computers
ISBN: 9811361940

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This book provides basic and practical techniques of parallel computing and related methods of numerical analysis for researchers who conduct numerical calculation and simulation. Although the techniques provided in this book are field-independent, these methods can be used in fields such as physics, chemistry, biology, earth sciences, space science, meteorology, disaster prevention, and manufacturing. In particular, those who develop software code in these areas will find this book useful. The contents are suitable for graduate students and researchers in computational science rather than novices at programming or informed experts in computer science. Starting with an introduction to the recent trends in computer architecture and parallel processing, Chapter 1 explains the basic knowledge of speedup programs with simple examples of numerical computing. Chapters 2 – 4 detail the basics of parallel programming, the message passing interface (MPI), and OpenMP and discuss hybrid parallelization techniques. Showing an actual example of adaptation, Chapter 5 gives an overview of performance tuning and communication optimizations. To deal with dense matrix calculations, Chapter 6 details the basics and practice of linear algebra calculation libraries BLAS and LAPACK, including some examples that can be easily reproduced by readers using free software. Focusing on sparse matrix calculations, Chapter 7 explains high performance algorithms for numerical linear algebra. Chapter 8 introduces the fast Fourier transform in large-scale systems from the basics. Chapter 9 explains optimization and related topics such as debug methods and version control systems. Chapter 10 discusses techniques for increasing computation accuracy as an essential topic in numerical calculation. This is the first of the two volumes that grew out of a series of lectures in the K computer project in Japan. The second volume will focus on advanced techniques and examples of applications in materials science.


The Art of High Performance Computing for Computational Science, Vol. 1

The Art of High Performance Computing for Computational Science, Vol. 1
Author: Masaaki Geshi
Publisher:
Total Pages: 219
Release: 2019
Genre: Chemistry
ISBN: 9789811361951

Download The Art of High Performance Computing for Computational Science, Vol. 1 Book in PDF, ePub and Kindle

This book provides basic and practical techniques of parallel computing and related methods of numerical analysis for researchers who conduct numerical calculation and simulation. Although the techniques provided in this book are field-independent, these methods can be used in fields such as physics, chemistry, biology, earth sciences, space science, meteorology, disaster prevention, and manufacturing. In particular, those who develop software code in these areas will find this book useful. The contents are suitable for graduate students and researchers in computational science rather than novices at programming or informed experts in computer science. Starting with an introduction to the recent trends in computer architecture and parallel processing, Chapter 1 explains the basic knowledge of speedup programs with simple examples of numerical computing. Chapters 2 - 4 detail the basics of parallel programming, the message passing interface (MPI), and OpenMP and discuss hybrid parallelization techniques. Showing an actual example of adaptation, Chapter 5 gives an overview of performance tuning and communication optimizations. To deal with dense matrix calculations, Chapter 6 details the basics and practice of linear algebra calculation libraries BLAS and LAPACK, including some examples that can be easily reproduced by readers using free software. Focusing on sparse matrix calculations, Chapter 7 explains high performance algorithms for numerical linear algebra. Chapter 8 introduces the fast Fourier transform in large-scale systems from the basics. Chapter 9 explains optimization and related topics such as debug methods and version control systems. Chapter 10 discusses techniques for increasing computation accuracy as an essential topic in numerical calculation. This is the first of the two volumes that grew out of a series of lectures in the K computer project in Japan. The second volume will focus on advanced techniques and examples of applications in materials science.


The Art of High Performance Computing for Computational Science, Vol. 2

The Art of High Performance Computing for Computational Science, Vol. 2
Author: Masaaki Geshi
Publisher: Springer Nature
Total Pages: 209
Release: 2019-10-01
Genre: Computers
ISBN: 981139802X

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This book presents advanced and practical techniques for performance optimization for highly parallel processing. Featuring various parallelization techniques in material science, it is a valuable resource for anyone developing software codes for computational sciences such as physics, chemistry, biology, earth sciences, space science, weather, disaster prevention and manufacturing, as well as for anyone using those software codes. Chapter 1 outlines supercomputers and includes a brief explanation of the history of hardware. Chapter 2 presents procedures for performance evaluation, while Chapter 3 describes the set of tuned applications in materials science, nanoscience and nanotechnology, earth science and engineering on the K computer. Introducing the order-N method, based on density functional theory (DFT) calculation, Chapter 4 explains how to extend the applicability of DFT to large-scale systems by reducing the computational complexity. Chapter 5 discusses acceleration and parallelization in classical molecular dynamics simulations, and lastly, Chapter 6 explains techniques for large-scale quantum chemical calculations, including the order-N method. This is the second of the two volumes that grew out of a series of lectures in the K computer project in Japan. The first volume addresses more basic techniques, and this second volume focuses on advanced and concrete techniques.


Introduction to High Performance Scientific Computing

Introduction to High Performance Scientific Computing
Author: Victor Eijkhout
Publisher: Lulu.com
Total Pages: 536
Release: 2010
Genre: Computers
ISBN: 1257992546

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This is a textbook that teaches the bridging topics between numerical analysis, parallel computing, code performance, large scale applications.


Contemporary High Performance Computing

Contemporary High Performance Computing
Author: Jeffrey S. Vetter
Publisher: CRC Press
Total Pages: 454
Release: 2019-05-08
Genre: Computers
ISBN: 1351036858

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Contemporary High Performance Computing: From Petascale toward Exascale, Volume 3 focuses on the ecosystems surrounding the world’s leading centers for high performance computing (HPC). It covers many of the important factors involved in each ecosystem: computer architectures, software, applications, facilities, and sponsors. This third volume will be a continuation of the two previous volumes, and will include other HPC ecosystems using the same chapter outline: description of a flagship system, major application workloads, facilities, and sponsors. Features: Describes many prominent, international systems in HPC from 2015 through 2017 including each system’s hardware and software architecture Covers facilities for each system including power and cooling Presents application workloads for each site Discusses historic and projected trends in technology and applications Includes contributions from leading experts Designed for researchers and students in high performance computing, computational science, and related areas, this book provides a valuable guide to the state-of-the art research, trends, and resources in the world of HPC.


Advances in High Performance Computing and Computational Sciences

Advances in High Performance Computing and Computational Sciences
Author: Yurii I. Shokin
Publisher: Springer Science & Business Media
Total Pages: 231
Release: 2006-09-25
Genre: Technology & Engineering
ISBN: 3540338446

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This volume contains contributions to the First Kazakh-German Advanced Research Workshop on Computational Science and High Performance Computing presented in September 2005 at Almaty, Kazakhstan. The workshop was organized by the High Performance Computing Center Stuttgart (Stuttgart, Germany), al-Farabi Kazakh National University (Almaty, Kazakhstan) and the Institute of Computational Technologies SB RAS (Novosibirsk, Russia) in the framework of activities of the German-Russian Center for Computational Technologies and High Performance


The Art of HPC, Volume 1: the Science of Computing

The Art of HPC, Volume 1: the Science of Computing
Author: Victor Eijkhout
Publisher:
Total Pages: 0
Release: 2022-12-23
Genre:
ISBN: 9781387388561

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The field of High Performance Computing lies at the crossroad of a number of disciplines and skill sets. Correspondingly, for someone to be successful at using HPC in science requires at least elementary knowledge of and skills in all these areas. The series "The Art of High Performance Computing" brings together the components that make up the toolbox of a computational scientist.Volume 1, "The Science of Computing" provides HPC practitioners the conceptual background to understand and employ the techniques of the field. Major chapters cover processor architecture, parallel computer design, computer arithmetic, computational aspects of numerical modeling. All this is brought together in analyses of the performance behavior of common computational algorithms.Victor Eijkhout is a research scientist at the Texas Advanced Computing Center of The University of Texas at Austin.


High Performance Computing in Science and Engineering '19

High Performance Computing in Science and Engineering '19
Author:
Publisher:
Total Pages: 583
Release: 2021
Genre: Electronic books
ISBN: 9783030667931

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This book presents the state-of-the-art in supercomputer simulation. It includes the latest findings from leading researchers using systems from the High Performance Computing Center Stuttgart (HLRS) in 2019. The reports cover all fields of computational science and engineering ranging from CFD to computational physics and from chemistry to computer science with a special emphasis on industrially relevant applications. Presenting findings of one of Europe's leading systems, this volume covers a wide variety of applications that deliver a high level of sustained performance. The book covers the main methods in high-performance computing. Its outstanding results in achieving the best performance for production codes are of particular interest for both scientists and engineers. The book comes with a wealth of color illustrations and tables of results.


High Performance Computing in Science and Engineering ‘14

High Performance Computing in Science and Engineering ‘14
Author: Wolfgang E. Nagel
Publisher: Springer
Total Pages: 691
Release: 2015-02-14
Genre: Computers
ISBN: 3319108107

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This book presents the state-of-the-art in supercomputer simulation. It includes the latest findings from leading researchers using systems from the High Performance Computing Center Stuttgart (HLRS). The reports cover all fields of computational science and engineering ranging from CFD to computational physics and from chemistry to computer science with a special emphasis on industrially relevant applications. Presenting findings of one of Europe’s leading systems, this volume covers a wide variety of applications that deliver a high level of sustained performance. The book covers the main methods in high-performance computing. Its outstanding results in achieving the best performance for production codes are of particular interest for both scientists and engineers. The book comes with a wealth of color illustrations and tables of results.


High Performance Computing in Science and Engineering ' 18

High Performance Computing in Science and Engineering ' 18
Author: Wolfgang E. Nagel
Publisher: Springer
Total Pages: 514
Release: 2019-06-07
Genre: Computers
ISBN: 3030133257

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This book presents the state-of-the-art in supercomputer simulation. It includes the latest findings from leading researchers using systems from the High Performance Computing Center Stuttgart (HLRS) in 2018. The reports cover all fields of computational science and engineering ranging from CFD to computational physics and from chemistry to computer science with a special emphasis on industrially relevant applications. Presenting findings of one of Europe’s leading systems, this volume covers a wide variety of applications that deliver a high level of sustained performance. The book covers the main methods in high-performance computing. Its outstanding results in achieving the best performance for production codes are of particular interest for both scientists and engineers. The book comes with a wealth of color illustrations and tables of results.