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Systems Biology of MicroRNAs in Cancer

Systems Biology of MicroRNAs in Cancer
Author: Ulf Schmitz
Publisher: Springer Nature
Total Pages: 321
Release: 2022-11-09
Genre: Medical
ISBN: 3031083563

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This book provides an update on the latest development in the field of microRNAs in cancer research with an emphasis on translational research. Since the early 2000s, microRNAs have been recognized as important and ubiquitous regulators of gene expression. Soon it became evident that their deregulation can cause human diseases including cancer. This book focuses on the emerging opportunities for the application of microRNA research in clinical practice. In this context, computer models are presented that can help to identify novel biomarkers, e.g. in circulating microRNAs, and tools that can help to design microRNA-based therapeutic interventions. Other chapters evaluate the role of microRNAs in immunotherapy, immune responses and drug resistance. Covering key topics on microRNAs in cancer research this book is a valuable resource for both emerging and established microRNA researchers who want to explore the potential of microRNAs as therapeutic targets or co-adjuvants in cancer therapies.


MicroRNA Cancer Regulation

MicroRNA Cancer Regulation
Author: Ulf Schmitz
Publisher: Springer Science & Business Media
Total Pages: 352
Release: 2013-02-03
Genre: Medical
ISBN: 9400755902

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This edited reflects the current state of knowledge about the role of microRNAs in the formation and progression of solid tumours. The main focus lies on computational methods and applications, together with cutting edge experimental techniques that are used to approach all aspects of microRNA regulation in cancer. We are sure that the emergence of high-throughput quantitative techniques will make this integrative approach absolutely necessary in the near future. This book will be a resource for researchers starting out with cancer microRNA research, but is also intended for the experienced researcher who wants to incorporate concepts and tools from systems biology and bioinformatics into his work. Bioinformaticians and modellers are provided with a general perspective on microRNA biology in cancer, and the state-of-the-art in computational microRNA biology.


Systems Biology in Cancer Research and Drug Discovery

Systems Biology in Cancer Research and Drug Discovery
Author: Asfar S Azmi
Publisher: Springer Science & Business Media
Total Pages: 425
Release: 2012-09-29
Genre: Medical
ISBN: 9400748191

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Systems Biology in Cancer Research and Drug Discovery provides a unique collection of chapters, by world-class researchers, describing the use of integrated systems biology and network modeling in the cancer field where traditional tools have failed to deliver expected promise. This book touches four applications/aspects of systems biology (i) in understanding aberrant signaling in cancer (ii) in identifying biomarkers and prognostic markers especially focused on angiogenesis pathways (iii) in unwinding microRNAs complexity and (iv) in anticancer drug discovery and in clinical trial design. This book reviews the state-of-the-art knowledge and touches upon cutting edge newer and improved applications especially in the area of network modeling. It is aimed at an audience ranging from students, academics, basic researcher and clinicians in cancer research. This book is expected to benefit the field of translational cancer medicine by bridging the gap between basic researchers, computational biologists and clinicians who have one ultimate goal and that is to defeat cancer.


MicroRNA and Cancer

MicroRNA and Cancer
Author: Wei Wu
Publisher: Humana Press
Total Pages: 273
Release: 2016-08-23
Genre: Medical
ISBN: 9781493957743

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The tiny microRNAs (miRNAs) can have huge impacts on the regulation of a variety of genes and play crucial roles in the fundamental cellular processes. Recent miRNA studies change the landscape of cancer genetics by scrutinizing the alterations of genome-wide miRNA expressions in most common cancers and their regulatory functions during the development of cancer. The connections between miRNAs and cancer are widespread enough to warrant more comprehensive investigations in the systems biology perspective. In MicroRNA and Cancer: Methods and Protocols, internationally renowned experts provide the latest miRNA knowledge, the various techniques and methodologies currently available for cancer research application. Ranging from the fundamental concepts to practical applications, this book presents: • Overview of microRNA biogenesis, computational prediction of new miRNAs in the cancer genome, and miRNA-based therapeutic approaches for cancer treatment • Detailed experimental protocols in miRNA detection with novel and high-throughput technology, miRNA library cloning, miRNA epigenetic regulation, and miRNA pathway study • Stepwise computational and bioinformatic procedures for miRNA complex networks in cancer genomes with a variety of softwares and programs • Cross-cited notes on troubleshooting and avoiding known pitfalls Authoritative and cutting-edge, MicroRNA and Cancer: Methods and Protocols serves researchers with the basic principles of experimental and computational methods for microRNA study in cancer research and provides a firm grounding for those who wish to further develop their own applications and tailor them to their own specific research needs.


MicroRNA Profiling in Cancer

MicroRNA Profiling in Cancer
Author: Yuriy Gusev
Publisher: CRC Press
Total Pages: 257
Release: 2019-09-06
Genre: Medical
ISBN: 9814267546

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This book presents current advances in the emerging interdisciplinary field of microRNA research of human cancers from a unique perspective of quantitative sciences: bioinformatics, computational and systems biology, and mathematical modeling. This volume contains adaptations and critical reviews of recent state-of-the-art studies, ranging from technological advances in microRNA detection and profiling, clinically oriented microRNA profiling in several human cancers, to a systems biology analysis of global patterns of microRNA regulation of signaling and metabolic pathways. Interactions with transcription factor regulatory networks and mathematical modeling of microRNA regulation are also discussed.


MicroRNAs in Cancer

MicroRNAs in Cancer
Author: César López-Camarillo
Publisher: CRC Press
Total Pages: 428
Release: 2013-02-22
Genre: Science
ISBN: 1466576766

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MicroRNA (miRNA) biology is a cutting-edge topic in basic as well as biomedical research. This is a specialized book focusing on the current understanding of the role of miRNAs in the development, progression, invasion, and metastasis of diverse types of cancer. It also reviews their potential for applications in cancer diagnosis, prognosis, and therapeutic targets as well as the potential use in translational medicine. Chapters present comprehensive and expert perspectives on the roles of miRNAs in most common cancers from bench to bedside applications and are written by an international team of renowned experts in the field.


Systems Biology and the Challenge of Deciphering the Metabolic Mechanisms Underlying Cancer

Systems Biology and the Challenge of Deciphering the Metabolic Mechanisms Underlying Cancer
Author: Osbaldo Resendis-Antonio
Publisher: Frontiers Media SA
Total Pages: 144
Release: 2017-11-23
Genre:
ISBN: 2889453332

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Since the discovery of the Warburg effect in the 1920s cancer has been tightly associated with the genetic and metabolic state of the cell. One of the hallmarks of cancer is the alteration of the cellular metabolism in order to promote proliferation and undermine cellular defense mechanisms such as apoptosis or detection by the immune system. However, the strategies by which this is achieved in different cancers and sometimes even in different patients of the same cancer is very heterogeneous, which hinders the design of general treatment options. Recently, there has been an ongoing effort to study this phenomenon on a genomic scale in order to understand the causality underlying the disease. Hence, current “omics” technologies have contributed to identify and monitor different biological pieces at different biological levels, such as genes, proteins or metabolites. These technological capacities have provided us with vast amounts of clinical data where a single patient may often give rise to various tissue samples, each of them being characterized in detail by genomescale data on the sequence, expression, proteome and metabolome level. Data with such detail poses the imminent problem of extracting meaningful interpretations and translating them into specific treatment options. To this purpose, Systems Biology provides a set of promising computational tools in order to decipher the mechanisms driving a healthy cell’s metabolism into a cancerous one. However, this enterprise requires bridging the gap between large data resources, mathematical analysis and modeling specifically designed to work with the available data. This is by no means trivial and requires high levels of communication and adaptation between the experimental and theoretical side of research.


Computational Biomedicine

Computational Biomedicine
Author: Peter Coveney
Publisher: Oxford University Press, USA
Total Pages: 294
Release: 2014-06
Genre: Computers
ISBN: 0199658188

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Computational Biomedicine unifies the different strands of a broad-ranging subject to demonstrate the power of a tool that has the potential to revolutionise our understanding of the human body, and the therapeutic strategies available to maintain and protect it.


MiRNomics

MiRNomics
Author: Malik Yousef
Publisher:
Total Pages: 333
Release: 2014
Genre: RNA
ISBN: 9781627037488

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In miRNomics: MicroRNA Biology and Computational Analysis, expert researchers in the field present an overview of the current state of the art and aim to put the respective areas of research into a larger perspective. These include methods and techniques ranging from miRNA biogenesis, their biological function, computational analyses to their medical implications and applications. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, miRNomics: MicroRNA Biology and Computational Analysis seeks to aid scientists in the further study into miRNA research and statistics.


An Integrated Systems Biology Approach to Illustrate that Blood-sourced MiRNAs are Not Diagnostic of Breast Cancer

An Integrated Systems Biology Approach to Illustrate that Blood-sourced MiRNAs are Not Diagnostic of Breast Cancer
Author: Irene Pylypenko
Publisher:
Total Pages:
Release: 2020
Genre:
ISBN:

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"Breast cancer (BC) is the most common cancer in women worldwide, and current detection technologies have limitations. MicroRNAs (miRNAs) are small 18-22 nucleotide single-stranded RNAs and there is some evidence suggesting that miRNAs in blood samples may be used as diagnostic biomarkers for BC. The Norwegian Women and Cancer (NOWAC) is a large prospective study that has collected blood and tumor biopsy samples from BC patients and healthy tissue from age-matched controls. Using the Illumina microarray system, miRNA and messenger RNA (mRNA) expression profiles were generated for 96 breast cancer cases with matched controls. We identified thirty-eight miRNAs that discriminate between breast cancer and matched healthy controls, some of which (miR-210, miR-335, miR-145, miR-15a/b) have been previously identified as potential diagnostic markers in blood samples of breast cancer patients. Then, we applied three different miRNA target prediction tools to look for potential gene targets based on a simple negative association miRNA-target model. In our clustering analysis, the predicted gene sets identified in the matched mRNA expression profile did not follow the classical negative association miRNA-target model. Thus, inconsistent with the hypothesized model, as also supported by previous studies. Functional analysis of identified miRNAs and their predicted target genes identified some gene pathways involved in breast cancer, such as B cell receptor signaling pathway, BRCA1 expression network, and p53 a common oncogenic signal pathway. Although miRNAs show promising results as diagnostic markers in blood samples of breast cancer patients, there is much work to be done in understanding the relationship between miRNAs and their target genes in order to identify viable miRNA biomarkers for breast cancer"--