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Stochastic Processes in Genetics and Evolution

Stochastic Processes in Genetics and Evolution
Author: Charles J. Mode
Publisher: World Scientific
Total Pages: 695
Release: 2012
Genre: Mathematics
ISBN: 9814350680

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Prologue; Acknowledgments; Contents; 1. An Introduction to Mathematical Probability with Applications in Mendelian Genetics; 1.1 Introduction; 1.2 Mathematical Probability in Mendelian Genetics; 1.3 Examples of Finite Probability Spaces; Example 1.3.1: An Equal Frequency Model; Example 1.3.2: Partitions of an Abstract Set; Example 1.3.3: A Deterministic Case; Example 1.3.4: Inheritance of Eye Color and Sex; 1.4 Elementary Combinatorial Analysis; 1.5 The Binomial Distribution; Example 1.5.1: Distribution of Boys and Girls in Families of Size N.


Stochastic Processes In Genetics And Evolution: Computer Experiments In The Quantification Of Mutation And Selection

Stochastic Processes In Genetics And Evolution: Computer Experiments In The Quantification Of Mutation And Selection
Author: Charles J Mode
Publisher: World Scientific
Total Pages: 695
Release: 2012-02-13
Genre: Mathematics
ISBN: 9814397075

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The scope of this book is the field of evolutionary genetics. The book contains new methods for simulating evolution at the genomic level. It sets out applications using up to date Monte Carlo simulation methods applied in classical population genetics, and sets out new fields of quantifying mutation and selection at the Mendelian level. A serious limitation of Wright-Fisher process, the assumption that population size is constant, motivated the introduction of self regulating branching processes in this book. While providing a short review of the principles of probability and its application and using computer intensive methods whilst applying these principles, this book explains how it is possible to derive new formulas expressed in terms of matrix algebra providing new insights into the classical Wright-Fisher processes of evolutionary genetics. Also covered are the development of new methods for studying genetics and evolution, simulating nucleotide substitutions of a DNA molecule and on self regulating branching processes. Components of natural selection are studied in terms of reproductive success of each genotype whilst also studying the differential ability of genotypes to compete for resources and sexual selection. The concept of the gene is also reviewed in this book, and it provides a current definition of a gene based on very recent experiments with micro-array technologies. A development of stochastic models for simulating the evolution of model genomes concludes the studies in this book. Deserving of a place on the book shelves of workers in biomathematics, applied probability, stochastic processes and statistics, as well as in bioinformatics and phylogenetics, it will also be relevant to those interested in computer simulation, and evolutionary biologists interested in quantitative methods.


Applications of Monte Carlo Methods in Biology, Medicine and Other Fields of Science

Applications of Monte Carlo Methods in Biology, Medicine and Other Fields of Science
Author: Charles J. Mode
Publisher: BoD – Books on Demand
Total Pages: 442
Release: 2011-02-28
Genre: Computers
ISBN: 9533074272

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This volume is an eclectic mix of applications of Monte Carlo methods in many fields of research should not be surprising, because of the ubiquitous use of these methods in many fields of human endeavor. In an attempt to focus attention on a manageable set of applications, the main thrust of this book is to emphasize applications of Monte Carlo simulation methods in biology and medicine.


Stochasticity in Processes

Stochasticity in Processes
Author: Peter Schuster
Publisher: Springer
Total Pages: 728
Release: 2016-10-14
Genre: Science
ISBN: 3319395025

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This book has developed over the past fifteen years from a modern course on stochastic chemical kinetics for graduate students in physics, chemistry and biology. The first part presents a systematic collection of the mathematical background material needed to understand probability, statistics, and stochastic processes as a prerequisite for the increasingly challenging practical applications in chemistry and the life sciences examined in the second part. Recent advances in the development of new techniques and in the resolution of conventional experiments at nano-scales have been tremendous: today molecular spectroscopy can provide insights into processes down to scales at which current theories at the interface of physics, chemistry and the life sciences cannot be successful without a firm grasp of randomness and its sources. Routinely measured data is now sufficiently accurate to allow the direct recording of fluctuations. As a result, the sampling of data and the modeling of relevant processes are doomed to produce artifacts in interpretation unless the observer has a solid background in the mathematics of limited reproducibility. The material covered is presented in a modular approach, allowing more advanced sections to be skipped if the reader is primarily interested in applications. At the same time, most derivations of analytical solutions for the selected examples are provided in full length to guide more advanced readers in their attempts to derive solutions on their own. The book employs uniform notation throughout, and a glossary has been added to define the most important notions discussed.


Evolutionary Biology: Self/Nonself Evolution, Species and Complex Traits Evolution, Methods and Concepts

Evolutionary Biology: Self/Nonself Evolution, Species and Complex Traits Evolution, Methods and Concepts
Author: Pierre Pontarotti
Publisher: Springer
Total Pages: 396
Release: 2017-08-08
Genre: Science
ISBN: 3319615696

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This book presents 19 selected contributions to the 20th Evolutionary Biology Meeting in Marseille, which took place in September 2016. They are grouped under the following major themes: · Self/Nonself Evolution · Species Evolution and Evolution of Complex Traits · Methods and Concepts The aims of the annual meetings in Marseille – which bring together leading evolutionary biologists and other scientists using evolutionary biology concepts, e.g. for medical research – are to promote the exchange of ideas and to encourage interdisciplinary collaborations. Offering a revealing overview of the latest findings in the field of evolutionary biology, this book represents an invaluable source of information for scientists, teachers and advanced students alike.


Research Awards Index

Research Awards Index
Author:
Publisher:
Total Pages: 1368
Release: 1977
Genre: Medicine
ISBN:

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Population Genetics

Population Genetics
Author: John H. Gillespie
Publisher: JHU Press
Total Pages: 263
Release: 2004-08-06
Genre: Medical
ISBN: 0801880084

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Publisher Description


Zoological Record

Zoological Record
Author:
Publisher:
Total Pages: 984
Release: 1990
Genre: Classification
ISBN:

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Sequence — Evolution — Function

Sequence — Evolution — Function
Author: Eugene V. Koonin
Publisher: Springer Science & Business Media
Total Pages: 482
Release: 2013-06-29
Genre: Science
ISBN: 1475737831

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Sequence - Evolution - Function is an introduction to the computational approaches that play a critical role in the emerging new branch of biology known as functional genomics. The book provides the reader with an understanding of the principles and approaches of functional genomics and of the potential and limitations of computational and experimental approaches to genome analysis. Sequence - Evolution - Function should help bridge the "digital divide" between biologists and computer scientists, allowing biologists to better grasp the peculiarities of the emerging field of Genome Biology and to learn how to benefit from the enormous amount of sequence data available in the public databases. The book is non-technical with respect to the computer methods for genome analysis and discusses these methods from the user's viewpoint, without addressing mathematical and algorithmic details. Prior practical familiarity with the basic methods for sequence analysis is a major advantage, but a reader without such experience will be able to use the book as an introduction to these methods. This book is perfect for introductory level courses in computational methods for comparative and functional genomics.


Gene Quantification

Gene Quantification
Author: Francois Ferre
Publisher: Springer Science & Business Media
Total Pages: 379
Release: 2012-12-06
Genre: Medical
ISBN: 1461241642

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Geneticists and molecular biologists have been interested in quantifying genes and their products for many years and for various reasons (Bishop, 1974). Early molecular methods were based on molecular hybridization, and were devised shortly after Marmur and Doty (1961) first showed that denaturation of the double helix could be reversed - that the process of molecular reassociation was exquisitely sequence dependent. Gillespie and Spiegelman (1965) developed a way of using the method to titrate the number of copies of a probe within a target sequence in which the target sequence was fixed to a membrane support prior to hybridization with the probe - typically a RNA. Thus, this was a precursor to many of the methods still in use, and indeed under development, today. Early examples of the application of these methods included the measurement of the copy numbers in gene families such as the ribosomal genes and the immunoglo bulin family. Amplification of genes in tumors and in response to drug treatment was discovered by this method. In the same period, methods were invented for estimating gene num bers based on the kinetics of the reassociation process - the so-called Cot analysis. This method, which exploits the dependence of the rate of reassociation on the concentration of the two strands, revealed the presence of repeated sequences in the DNA of higher eukaryotes (Britten and Kohne, 1968). An adaptation to RNA, Rot analysis (Melli and Bishop, 1969), was used to measure the abundance of RNAs in a mixed population.