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Steady-state Learning and Synaptic Connectivity in Local Cortical Networks of Excitatory and Ihibitory Neurons

Steady-state Learning and Synaptic Connectivity in Local Cortical Networks of Excitatory and Ihibitory Neurons
Author: Julio Ivan Chapeton
Publisher:
Total Pages: 90
Release: 2014
Genre: Associative storage
ISBN:

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Learning and memory storage are arguably the most fundamental and well-studied functions of the mammalian cortex. It is established that these functions are mediated by many forms of synaptic plasticity, which shape neural circuits in the course of learning by creating, modifying, and eliminating individual synaptic connections. Nevertheless, the effects of learning and memory storage on the cortical connectivity diagram in the adult are largely unknown. In general, it is difficult to find examples where the link between a function and the connectivity of the underlying neural circuit is completely understood. Experiments have shown that some connectivity features are ubiquitously present in local cortical networks. These features include very sparse connectivity of excitatory neuron axons, much denser connectivity established by the axons of many inhibitory neuron classes, and stereotypically distributed connection weights. Given the pervasiveness of these features, is it possible that they could have arisen as a direct consequence of learning? To answer this question, in Chapter 2 we examine a biologically realistic, yet exactly solvable model of associative memory which is based on the hypothesis that synaptic connectivity in a given local circuit of adult cortex is in a steady-state; in this state the associative memory storage capacity of the circuit is maximal and learning of new associations is accompanied by forgetting of some of the old ones. The model is applicable to networks of multiple excitatory and inhibitory neuron classes and can account for homeostatic constraints on the number and the overall weight of functional connections received by each neuron. In Chapter 3 we describe how the model was solved analytically by using the replica theory from statistical physics, and we highlight the most salient features of synaptic connectivity which arise from steady-state learning. Chapter 4 is devoted to testing the validity of the model by comparing these features with a large dataset of published experimental studies reporting amplitudes of unitary postsynaptic potentials and probabilities of connections between various classes of excitatory and inhibitory neurons in the cerebellum, neocortex, and hippocampus. The theoretical results are in good agreement with these experimental measurements, suggesting that stereotypic features of adult connectivity can form despite functional differences among brain areas and diverse learning experiences of individual animals. Lastly, in Chapter 5 we show how biologically constrained learning can be used in a machine learning methodology to accurately trace sparsely labeled neurites in light microscopy stacks of images.


Inhibitory Synaptic Plasticity

Inhibitory Synaptic Plasticity
Author: Melanie A. Woodin
Publisher: Springer Science & Business Media
Total Pages: 191
Release: 2010-11-02
Genre: Medical
ISBN: 1441969780

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This volume will explore the most recent findings on cellular mechanisms of inhibitory plasticity and its functional role in shaping neuronal circuits, their rewiring in response to experience, drug addiction and in neuropathology. Inhibitory Synaptic Plasticity will be of particular interest to neuroscientists and neurophysiologists.


Associative Learning in Cortical and Artificial Neural Networks

Associative Learning in Cortical and Artificial Neural Networks
Author: Chi Zhang
Publisher:
Total Pages: 123
Release: 2020
Genre: Computational neuroscience
ISBN:

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"One of the main goals of neuroscience is to explain the basic functions of the brain such as thought, learning, and control of movement. A comprehensive explanation of these functions must span different temporal and spatial scales to connect the workings of the brain at the molecular level to the circuit level to the level of behavior. This dissertation focuses on learning and formation of long-term memories - functions that are mediated by changes in synaptic connectivity. I examine the effects of learning on the connectivity and dynamics of networks in the brain and artificial neural networks. In the first chapter of this dissertation, I propose that many basic structural and dynamical properties of local cortical circuits result from associative learning. This hypothesis is tested in a network model of inhibitory and excitatory McCulloch and Pitts neurons loaded with associative sequences to capacity. I solve the learning problem analytically and numerically to show that such networks exhibit many ubiquities properties of local cortical citrus. These include structural properties, such as the probabilities of connections between inhibitory and excitatory neurons, distributions of weights for these connection types, overexpression of specific 2- and 3-neuron motifs, along with various properties of network dynamics. Because signal transmission in the brain is accompanied by many sources of errors and noise, in the second chapter of this dissertation I explore the effect of such unavoidable hindrances on learning and network properties. I argue that noise should not be viewed as a nuisance, but that it is an essential component of the reliable learning mechanism implemented by the brain. To test this hypothesis, I formulate and solve a biologically constrained network model of associative sequence learning in the presence of errors and noise. The results reveal that noise during learning increases the probability of memory retrieval and that it is required for optimal recovery of stored information. In the last chapter, I transition from biologically plausible artificial neuron network models of learning to a machine learning application. I develop a methodology for real-time automated reconstruction of neurons from 3D stacks of optical microscopy images. The pipeline is based on deep convolutional neural networks and includes image compression, image enhancement, segmentation of neuron cell bodies, and neurite tracing. I show that artificial neural networks can be trained to effectively compress 3D stacks of optical microscopy images and significantly enhance the intensity of neurites, making the results amenable for fast and accurate reconstruction of neurons"--Author's abstract.


Jasper's Basic Mechanisms of the Epilepsies

Jasper's Basic Mechanisms of the Epilepsies
Author: Jeffrey Noebels
Publisher: OUP USA
Total Pages: 1258
Release: 2012-06-29
Genre: Medical
ISBN: 0199746540

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Jasper's Basic Mechanisms, Fourth Edition, is the newest most ambitious and now clinically relevant publishing project to build on the four-decade legacy of the Jasper's series. In keeping with the original goal of searching for "a better understanding of the epilepsies and rational methods of prevention and treatment.", the book represents an encyclopedic compendium neurobiological mechanisms of seizures, epileptogenesis, epilepsy genetics and comordid conditions. Of practical importance to the clinician, and new to this edition are disease mechanisms of genetic epilepsies and therapeutic approaches, ranging from novel antiepileptic drug targets to cell and gene therapies.


Handbook of Brain Microcircuits

Handbook of Brain Microcircuits
Author: Gordon M. Shepherd
Publisher: Oxford University Press
Total Pages: 625
Release: 2018
Genre: Medical
ISBN: 0190636114

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In order to focus on principles, each chapter in this work is brief, organized around 1-3 wiring diagrams of the key circuits, with several pages of text that distil the functional significance of each microcircuit


The NEURON Book

The NEURON Book
Author: Nicholas T. Carnevale
Publisher: Cambridge University Press
Total Pages: 399
Release: 2006-01-12
Genre: Medical
ISBN: 1139447831

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The authoritative reference on NEURON, the simulation environment for modeling biological neurons and neural networks that enjoys wide use in the experimental and computational neuroscience communities. This book shows how to use NEURON to construct and apply empirically based models. Written primarily for neuroscience investigators, teachers, and students, it assumes no previous knowledge of computer programming or numerical methods. Readers with a background in the physical sciences or mathematics, who have some knowledge about brain cells and circuits and are interested in computational modeling, will also find it helpful. The NEURON Book covers material that ranges from the inner workings of this program, to practical considerations involved in specifying the anatomical and biophysical properties that are to be represented in models. It uses a problem-solving approach, with many working examples that readers can try for themselves.


Learning Temporal Representations in Cortical Networks Through Reward Dependent Expression of Synaptic Plasticity

Learning Temporal Representations in Cortical Networks Through Reward Dependent Expression of Synaptic Plasticity
Author: Jeffrey Peter Gavornik
Publisher:
Total Pages: 222
Release: 2009
Genre: Brain
ISBN:

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The neural basis of the brain's ability to represent time, which is an essential component of cognition, is unknown. Despite extensive behavioral and electrophysiological studies, a theoretical framework capable of describing the elementary neural mechanisms used by biological neural networks to learn temporal representations does not exist. It is commonly believed that the underlying cellular mechanisms reside in high order cortical regions and there is an ongoing debate about the neural structures required for temporal processing. Recent experimental studies report sustained neural activity that can represent the timing of expected reward in low-level primary sensory cortices, suggesting that temporal representation may form locally in sensory areas of the cortex. This thesis proposes a theoretical framework that explains how temporal representations of the type seen experimentally can be encoded in local cortical networks and how specific temporal instantiations can be learned through reward modulated synaptic plasticity. The proposed framework asserts that the mechanism responsible for encoding the observed temporal intervals is long-term synaptic potentiation between neurons in a recurrent network. Analytical and numerical techniques are used to demonstrate that the model is sufficient to allow näive networks of both linear and non-linear neurons to encode and reliably represent durations specified by external cues during a training period. Analysis of a non-linear spiking neuron model is accomplished using a mean-field approach. The form of temporal learning described has specific implications that can be confirmed experimentally and these predictions are highlighted. Experimental support for a central component of the model is presented and all of the the results are discussed in relation to current experimental and computational work.


Modeling and Computational Framework for the Specification and Simulation of Large-scale Spiking Neural Networks

Modeling and Computational Framework for the Specification and Simulation of Large-scale Spiking Neural Networks
Author: David James Herzfeld
Publisher:
Total Pages:
Release: 2007
Genre: Hemodynamics
ISBN:

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Recurrently connected neural networks, in which synaptic connections between neurons can form directed cycles, have been used extensively in the literature to describe various neurophysiological phenomena, such as coordinate transformations during sensorimotor integration. Due to the directed cycles that can exist in recurrent networks, there is no well-known way to a priori specify synaptic weights to elicit neuron spiking responses to stimuli based on available neurophysiology. Using a common mean field assumption, that synaptic inputs are uncorrelated for sufficiently large populations of neurons, we show that the connection topology and a neuron's response characteristics can be decoupled. This assumption allows specification of neuron steady-state responses independent of the connection topology. Specification of neuron responses necessitates the creation of a novel simulator (computational framework) which allows modeling of large populations of connected spiking neurons. We describe the implementation of a spike-based computational framework, designed to take advantage of high performance computing architectures when available. We show that performance of the computational framework is improved using multiple message passing processes for large populations of neurons, resulting in a worst-case linear relationship between the number of neurons and the time required to complete a simulation. Using the computational framework and the ability to specify neuron response characteristics independent of synaptic weights, we systematically investigate the effects of Hebbian learning on the hemodynamic response. Changes in the magnitude of the hemodynamic responses of neural populations are assessed using a forward model that relates population synaptic currents to the blood oxygen dependant (BOLD) response via local field potentials. We show that the magnitude of the hemodynamic response is not a accurate indicator of underlying spiking activity for all network topologies. Instead, we note that large changes in the aggregate response of the population (>50%) can results in a decrease in the overall magnitude of the BOLD signal. We hypothesize that the hemodynamic response magnitude changed due to fluctuations in the balance of excitatory and inhibitory inputs in neural subpopulations. These results have important implications for mean-field models, suggesting that the underlying excitatory/inhibitory neural dynamics within a population may need to be taken into account to accurately predict hemodynamic responses.


Insights in computational neuroscience

Insights in computational neuroscience
Author: Si Wu
Publisher: Frontiers Media SA
Total Pages: 150
Release: 2023-04-11
Genre: Science
ISBN: 2832520502

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Interaction of Synaptic Plasticity with Oscillations and Connectivity Lesion for Memory and Learning in Neural Network Models

Interaction of Synaptic Plasticity with Oscillations and Connectivity Lesion for Memory and Learning in Neural Network Models
Author: Kwan Tung Li
Publisher:
Total Pages: 210
Release: 2021
Genre: Alzheimer's disease
ISBN:

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Learning is a common ability, accompanied by gamma oscillation, across species to acquire new knowledge stored in the hippocampus and neocortex into short-term and long-term memory, respectively. Thus, memory is first stored as short-term memory quickly and then consolidated into long-term memory in a longer timescale. Excitatory to excitatory (E → E ) spike-timing-dependent plasticity (STDP), an experimentally observable synaptic plasticity, is a widely used mechanism to form synaptic clusters in neural network models, where memory is proposed to be stored in strengthened synapses within the cluster. However, the interaction between gamma oscillation and STDP is unclear. On the other hand, the role of inhibitory plasticity in memory cluster formation attracts the attention of scientists in recent years, but it is not well understood yet because of the numerous species of inhibitory neurons and their plasticity. Besides, connectivity lesion, such as induced by Alzheimer's disease, causes memory deficits and abnormal gamma oscillation, but its relation to memory cluster is still an open question. My doctoral research thus aimed to study the interaction among different types of synaptic plasticity, gamma oscillation and circuit connectivity in memory learning and recall through computer simulation of the integrate-and-fire neuronal network of excitatory and inhibitory (E-I) neurons. i In the first part of my study, we explored the interaction between gamma oscillation and E → E STDP in an E-I integrate-and-fire neuronal network with triplet STDP, heterosynaptic plasticity, and transmitter-induced plasticity. We show that the plasticity performance depends on the synchronization levels accompanied by the emergence of gamma oscillations. Moreover, gamma oscillation is beneficial to form a unique network structure through synaptic potentiation. Secondly, we were inspired by an experimental result to study the functional role of excitatory to inhibitory ( E → I ) plasticity in memory consolidation through a feedforward two-layer E-I circuit model. We found that E → I plasticity can prevent overexcitation and assist memory cluster formation. We also predict that suitable pulse input to inhibitory neurons can rescue the memory performance deficits in the absence of E → I plasticity. Thirdly, we used E-I neuronal network model to investigate the effect of connectivity reduction as a result of Alzheimer's diseases on the interaction between circuit dynamics and STDP and the rescue of memory performance by optogenetic stimulation found in the experiments. It is found that the firing rate of the persistent activity is increased if connectivity is reduced mildly because of a transition from synchronous state to asynchronous state, while the persistent activity cannot be maintained and the firing rate is reduced with severe connectivity reduction. iv Furthermore, we found that stimulation with gamma frequency in circuits with connectivity lesion is the best for memory rescue because it can suppress the activation of the memory clusters that were initially activated in the lesion circuit. Moreover, we found that connectivity reduction causes the merging of memory clusters and the deterioration of existing memories during learning new memory with STDP. The whole study gives more insight into the co-evolution between microscopic synaptic dynamics, such as synaptic weight change, firing rate and synchronization of neuron spikes, and macroscopic phenomena, like gamma oscillation, memory performance, and connectivity. Our results may have implications in clinical applications to develop suitable brain stimulation schemes for memory rescue in neurodegenerative diseases. Furthermore, the understanding of the interaction among neural connectivity, dynamics, and plasticity may also offer insight into braininspired neural networks in artificial intelligence.