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| Author | : Scott Markel |
| Publisher | : "O'Reilly Media, Inc." |
| Total Pages | : 308 |
| Release | : 2003-01-27 |
| Genre | : Computers |
| ISBN | : 9780596004941 |
This work pulls together all of the vital information about the most commonly used databases, analytical tools, and tables used in sequence analysis.
| Author | : Scott Markel |
| Publisher | : Turtleback Books |
| Total Pages | : 286 |
| Release | : 2003-02-01 |
| Genre | : Computers |
| ISBN | : 9780613912365 |
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases pulls together all of the vital information about the most commonly used databases, analytical tools, and tables used in sequence analysis.The book is partitioned into three fundamental areas to help you maximize your use of the content. The first section, Databases contains examples of flatfiles from key databases (GenBank, EMBL, SWISS-PROT), the definitions of the codes or fields used in each database, and the sequence feature types/terms and qualifiers for the nucleotide and protein databases.The second section, Tools provides the command line syntax for popular applications such as ReadSeq, MEME/MAST, BLAST, ClustalW, and the EMBOSS suite of analytical tools. The third section, Appendixes concentrates on information essential to understanding the individual components that make up a biological sequence. The tables in this section include nucleotide and protein codes, genetic codes, as well as other relevant information.Written in O'Reilly's enormously popular, straightforward Nutshell format, this book draws together essential information for bioinformaticians in industry and academia, as well as for students.If sequence analysis is part of your daily life, you'll want this easy-to-use book on your desk.
| Author | : Tore Samuelsson |
| Publisher | : Cambridge University Press |
| Total Pages | : 357 |
| Release | : 2012-06-07 |
| Genre | : Computers |
| ISBN | : 1107008565 |
A hands-on introduction to Unix, Perl and other bioinformatics tools using relevant and interesting molecular biology problems.
| Author | : Andreas D. Baxevanis |
| Publisher | : John Wiley & Sons |
| Total Pages | : 504 |
| Release | : 2004-03-24 |
| Genre | : Computers |
| ISBN | : 0471461016 |
"In this book, Andy Baxevanis and Francis Ouellette . . . haveundertaken the difficult task of organizing the knowledge in thisfield in a logical progression and presenting it in a digestibleform. And they have done an excellent job. This fine text will makea major impact on biological research and, in turn, on progress inbiomedicine. We are all in their debt." —Eric Lander from the Foreword Reviews from the First Edition "...provides a broad overview of the basic tools for sequenceanalysis ... For biologists approaching this subject for the firsttime, it will be a very useful handbook to keep on the shelf afterthe first reading, close to the computer." —Nature Structural Biology "...should be in the personal library of any biologist who usesthe Internet for the analysis of DNA and protein sequencedata." —Science "...a wonderful primer designed to navigate the novice throughthe intricacies of in scripto analysis ... The accomplished genesearcher will also find this book a useful addition to theirlibrary ... an excellent reference to the principles ofbioinformatics." —Trends in Biochemical Sciences This new edition of the highly successful Bioinformatics:A Practical Guide to the Analysis of Genes and Proteinsprovides a sound foundation of basic concepts, with practicaldiscussions and comparisons of both computational tools anddatabases relevant to biological research. Equipping biologists with the modern tools necessary to solvepractical problems in sequence data analysis, the Second Editioncovers the broad spectrum of topics in bioinformatics, ranging fromInternet concepts to predictive algorithms used on sequence,structure, and expression data. With chapters written by experts inthe field, this up-to-date reference thoroughly covers vitalconcepts and is appropriate for both the novice and the experiencedpractitioner. Written in clear, simple language, the book isaccessible to users without an advanced mathematical or computerscience background. This new edition includes: All new end-of-chapter Web resources, bibliographies, andproblem sets Accompanying Web site containing the answers to the problems,as well as links to relevant Web resources New coverage of comparative genomics, large-scale genomeanalysis, sequence assembly, and expressed sequence tags A glossary of commonly used terms in bioinformatics andgenomics Bioinformatics: A Practical Guide to the Analysis of Genesand Proteins, Second Edition is essential reading forresearchers, instructors, and students of all levels in molecularbiology and bioinformatics, as well as for investigators involvedin genomics, positional cloning, clinical research, andcomputational biology.
| Author | : Rob Sullivan |
| Publisher | : Springer Science & Business Media |
| Total Pages | : 644 |
| Release | : 2012-01-07 |
| Genre | : Science |
| ISBN | : 1597452904 |
Data mining provides a set of new techniques to integrate, synthesize, and analyze tdata, uncovering the hidden patterns that exist within. Traditionally, techniques such as kernel learning methods, pattern recognition, and data mining, have been the domain of researchers in areas such as artificial intelligence, but leveraging these tools, techniques, and concepts against your data asset to identify problems early, understand interactions that exist and highlight previously unrealized relationships through the combination of these different disciplines can provide significant value for the investigator and her organization.
| Author | : Yi-Ping Phoebe Chen |
| Publisher | : Springer Science & Business Media |
| Total Pages | : 420 |
| Release | : 2005-01-18 |
| Genre | : Computers |
| ISBN | : 9783540208730 |
Introductio to bioinformatics. Overview of structural bioinformatics. Database warehousing in bioinformatics. Modeling for bioinformatics. Pattern matching for motifs. Visualization and fractal analysis of biological sequences. Microarray data analysis.
| Author | : Jean-Michel Claverie |
| Publisher | : John Wiley & Sons |
| Total Pages | : 475 |
| Release | : 2011-02-10 |
| Genre | : Science |
| ISBN | : 1118051106 |
Were you always curious about biology but were afraid to sit through long hours of dense reading? Did you like the subject when you were in high school but had other plans after you graduated? Now you can explore the human genome and analyze DNA without ever leaving your desktop! Bioinformatics For Dummies is packed with valuable information that introduces you to this exciting new discipline. This easy-to-follow guide leads you step by step through every bioinformatics task that can be done over the Internet. Forget long equations, computer-geek gibberish, and installing bulky programs that slow down your computer. You’ll be amazed at all the things you can accomplish just by logging on and following these trusty directions. You get the tools you need to: Analyze all types of sequences Use all types of databases Work with DNA and protein sequences Conduct similarity searches Build a multiple sequence alignment Edit and publish alignments Visualize protein 3-D structures Construct phylogenetic trees This up-to-date second edition includes newly created and popular databases and Internet programs as well as multiple new genomes. It provides tips for using servers and places to seek resources to find out about what’s going on in the bioinformatics world. Bioinformatics For Dummies will show you how to get the most out of your PC and the right Web tools so you'll be searching databases and analyzing sequences like a pro!
| Author | : Gerardus Blokdyk |
| Publisher | : Createspace Independent Publishing Platform |
| Total Pages | : 140 |
| Release | : 2018-05-07 |
| Genre | : |
| ISBN | : 9781718739772 |
What role does communication play in the success or failure of a Sequence analysis project? ask yourself: are the records needed as inputs to the Sequence analysis process available? What vendors make products that address the Sequence analysis needs? Have the types of risks that may impact Sequence analysis been identified and analyzed? Which individuals, teams or departments will be involved in Sequence analysis? This valuable Sequence analysis self-assessment will make you the entrusted Sequence analysis domain assessor by revealing just what you need to know to be fluent and ready for any Sequence analysis challenge. How do I reduce the effort in the Sequence analysis work to be done to get problems solved? How can I ensure that plans of action include every Sequence analysis task and that every Sequence analysis outcome is in place? How will I save time investigating strategic and tactical options and ensuring Sequence analysis costs are low? How can I deliver tailored Sequence analysis advice instantly with structured going-forward plans? There's no better guide through these mind-expanding questions than acclaimed best-selling author Gerard Blokdyk. Blokdyk ensures all Sequence analysis essentials are covered, from every angle: the Sequence analysis self-assessment shows succinctly and clearly that what needs to be clarified to organize the required activities and processes so that Sequence analysis outcomes are achieved. Contains extensive criteria grounded in past and current successful projects and activities by experienced Sequence analysis practitioners. Their mastery, combined with the easy elegance of the self-assessment, provides its superior value to you in knowing how to ensure the outcome of any efforts in Sequence analysis are maximized with professional results. Your purchase includes access details to the Sequence analysis self-assessment dashboard download which gives you your dynamically prioritized projects-ready tool and shows you exactly what to do next. Your exclusive instant access details can be found in your book.
| Author | : Andreas D. Baxevanis |
| Publisher | : Wiley-Interscience |
| Total Pages | : 396 |
| Release | : 1998 |
| Genre | : Computers |
| ISBN | : |
"A reference that should be in the personal library of any biologist who uses the Internet for the analysis of DNA and protein sequence data" --Science
| Author | : Ian Korf |
| Publisher | : "O'Reilly Media, Inc." |
| Total Pages | : 363 |
| Release | : 2003-07-29 |
| Genre | : Computers |
| ISBN | : 0596002998 |
This is the only book completely devoted to the popular BLAST (Basic Local Alignment Search Tool), and one that every biologist with an interest in sequence analysis should learn from.
