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Population Genomics: Crop Plants

Population Genomics: Crop Plants
Author: Om P. Rajora
Publisher: Springer
Total Pages: 0
Release: 2024-07-26
Genre: Science
ISBN: 9783031630019

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Population genomics has revolutionized several disciplines of biology, genetic resource conservation and management, and breeding of crop plants by providing key and novel insights into population, evolutionary, ecological and conservation genetics, ecology, evolution and adaptation, and facilitating molecular breeding with an unprecedented power and accuracy. Crop plants have been domesticated from their wild progenitors over several centuries and have undergone severe genetic bottlenecks and selection sweeps. Population genomics research has unraveled novel insights into crop plants origin, evolution, demographic history, center of diversity, domestication history, genetic/genomic diversity and genetic structure of wild and domesticated populations and species, epigenomic diversity, genetic/genomic basis of domestication syndrome, genomic footprints of domestication, selection and breeding, de-domestication, speciation and admixture, taxonomy, phylogeny, ecology, biotic and abiotic stress tolerance, and ecological and climate adaptation. Population genomics has also facilitated the development of pangenomes, conservation and management of genetic diversity including in the pre-breeding and breeding programs, and genomics-assisted breeding via identifying genotype-phenotype associations and genomic selection in crop plants. This pioneering book presents the advances made and potential of population genomics in addressing the above crop plants aspects of basic and applied significance and brings together leading experts in crop plants population genomics to discuss these topics in major crop plants. Genomic, epigenomic, transcriptomic and plant resources available for population genomics research and challenges, opportunities and future perspectives of crop plants population genomics are also discussed. Chapters "Population Genomics of Yams: Evolution and Domestication of Dioscorea Species" and "Population Genomics Along With Quantitative Genetics Provides a More Efficient Valorization of Crop Plant Genetic Diversity in Breeding and Pre-breeding Programs" are available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.


Plant Genetic Conservation

Plant Genetic Conservation
Author: Nigel Maxted
Publisher: Cambridge University Press
Total Pages: 598
Release: 2020-09-10
Genre: Science
ISBN: 1108907776

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Plant diversity sustains all animal life, and the genetic diversity within plants underpins global food security. This text provides a practical and theoretical introduction to the strategies and actions to adopt for conserving plant genetic variation, as well as explaining how humans can exploit this diversity for sustainable development. Notably readable, it initially offers current knowledge on the characterization and evaluation of plant genetic resources. The authors then discuss strategies from in situ and ex situ conservation to crop breeding, exploring how these can be used to improve food security in the face of increasing agrobiodiversity loss, human population growth and climate change. Each chapter draws on examples from the literature or the authors' research and includes further reading references. Containing other useful features such as a glossary, it is invaluable for professionals and undergraduate and graduate students in plant sciences, ecology, conservation, genetics and natural resource management.


Population Genomics: Crop Plants

Population Genomics: Crop Plants
Author: Om P. Rajora
Publisher: Springer Nature
Total Pages: 947
Release:
Genre:
ISBN: 3031630025

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Population Genomics: Wildlife

Population Genomics: Wildlife
Author: Paul A. Hohenlohe
Publisher: Springer Nature
Total Pages: 559
Release: 2020-12-09
Genre: Science
ISBN: 3030634892

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Population genomics is revolutionizing wildlife biology, conservation, and management by providing key and novel insights into genetic, population and landscape-level processes in wildlife, with unprecedented power and accuracy. This pioneering book presents the advances and potential of population genomics in wildlife, outlining key population genomics concepts and questions in wildlife biology, population genomics approaches that are specifically applicable to wildlife, and application of population genomics in wildlife population and evolutionary biology, ecology, adaptation and conservation and management. It is important for students, researchers, and wildlife professionals to understand the growing set of population genomics tools that can address issues from delineation of wildlife populations to assessing their capacity to adapt to environmental change. This book brings together leading experts in wildlife population genomics to discuss the key areas of the field, as well as challenges, opportunities and future prospects of wildlife population genomics.


Population Genomics: Marine Organisms

Population Genomics: Marine Organisms
Author: Marjorie F. Oleksiak
Publisher: Springer Nature
Total Pages: 458
Release: 2019-12-31
Genre: Science
ISBN: 3030379361

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Population genomics has provided unprecedented opportunities to unravel the mysteries of marine organisms in the oceans' depths. The world's oceans, which make up 70% of our planet, encompass diverse habitats and host numerous unexplored populations and species. Population genomics studies of marine organisms are rapidly emerging and have the potential to transform our understanding of marine populations, species, and ecosystems, providing insights into how these organisms are evolving and how they respond to different stimuli and environments. This knowledge is critical for understanding the fundamental aspects of marine life, how marine organisms will respond to environmental changes, and how we can better protect and preserve marine biodiversity and resources. This book brings together leading experts in the field to address critical aspects of fundamental and applied research in marine species and share their research and insights crucial for understanding marine ecosystem diversity and function. It also discusses the challenges, opportunities and future perspectives of marine population genomics.


Paleogenomics

Paleogenomics
Author: Charlotte Lindqvist
Publisher: Springer
Total Pages: 427
Release: 2019-01-07
Genre: Science
ISBN: 3030047539

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Advances in genome-scale DNA sequencing technologies have revolutionized genetic research on ancient organisms, extinct species, and past environments. When it is recoverable after hundreds or thousands of years of unintended preservation, “ancient DNA” (or aDNA) is often highly degraded, necessitating specialized handling and analytical approaches. Paleogenomics defines the field of reconstructing and analyzing the genomes of historic or long-dead organisms, most often through comparison with modern representatives of the same or similar species. The opportunity to isolate and study paleogenomes has radically transformed many fields, spanning biology, anthropology, agriculture, and medicine. Examples include understanding evolutionary relationships of extinct species known only from fossils, the domestication of plants and animals, and the evolution and geographical spread of certain pathogens. This pioneering book presents a snapshot view of the history, current status, and future prospects of paleogenomics, taking a broad viewpoint that covers a range of topics and organisms to provide an up-to-date status of the applications, challenges, and promise of the field. This book is intended for a variety of readerships, including upper-level undergraduate and graduate students, professionals and experts in the field, as well as anyone excited by the extraordinary insights that paleogenomics offers.


Population Genomics

Population Genomics
Author: Om P. Rajora
Publisher: Springer
Total Pages: 822
Release: 2019-01-07
Genre: Science
ISBN: 3030045897

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Population genomics has revolutionized various disciplines of biology including population, evolutionary, ecological and conservation genetics, plant and animal breeding, human health, medicine and pharmacology by allowing to address novel and long-standing questions with unprecedented power and accuracy. It employs large-scale or genome-wide genetic information and bioinformatics to address various fundamental and applied aspects in biology and related disciplines, and provides a comprehensive genome-wide perspective and new insights that were not possible before. These advances have become possible due to the development of new and low-cost sequencing and genotyping technologies and novel statistical approaches and software, bioinformatics tools, and models. Population genomics is tremendously advancing our understanding the roles of evolutionary processes, such as mutation, genetic drift, gene flow, and natural selection, in shaping up genetic variation at individual loci and across the genome and populations; improving the assessment of population genetic parameters or processes such as adaptive evolution, effective population size, gene flow, admixture, inbreeding and outbreeding depression, demography, and biogeography; resolving evolutionary histories and phylogenetic relationships of extant, ancient and extinct species; understanding the genomic basis of fitness, adaptation, speciation, complex ecological and economically important traits, and disease and insect resistance; facilitating forensics, genetic medicine and pharmacology; delineating conservation genetic units; and understanding the genetic effects of resource management practices, and assisting conservation and sustainable management of genetic resources. This Population Genomics book discusses the concepts, approaches, applications and promises of population genomics in addressing most of the above fundamental and applied crucial aspects in a variety of organisms from microorganisms to humans. The book provides insights into a range of emerging population genomics topics including population epigenomics, landscape genomics, seascape genomics, paleogenomics, ecological and evolutionary genomics, biogeography, demography, speciation, admixture, colonization and invasion, genomic selection, and plant and animal domestication. This book fills a vacuum in the field and is expected to become a primary reference in Population Genomics world-wide.


Plant Population Genetics, Breeding, and Genetic Resources

Plant Population Genetics, Breeding, and Genetic Resources
Author: A. H. D. Brown
Publisher: Sinauer Associates, Incorporated
Total Pages: 470
Release: 1990
Genre: Science
ISBN:

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From the International Symposium on Population Genetics and Germplasm Resources in Crop Improvement, held August 1988 at U. Cal., Davis. Twenty-one contributions are grouped into three broad sections which consider the kinds and amounts of genetic diversity found in plant species at the protein and DNA levels; the structure of genetic variation and the evolutionary processes that shape genetic diversity; and applications in forestry, crop improvement, and the conservation and use of crop genetic resources. Cloth edition (unseen), $60. Annotation copyrighted by Book News, Inc., Portland, OR


Principles of Plant Genetics and Breeding

Principles of Plant Genetics and Breeding
Author: George Acquaah
Publisher: John Wiley & Sons
Total Pages: 855
Release: 2020-12-14
Genre: Science
ISBN: 1119626323

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The revised edition of the bestselling textbook, covering both classical and molecular plant breeding Principles of Plant Genetics and Breeding integrates theory and practice to provide an insightful examination of the fundamental principles and advanced techniques of modern plant breeding. Combining both classical and molecular tools, this comprehensive textbook describes the multidisciplinary strategies used to produce new varieties of crops and plants, particularly in response to the increasing demands to of growing populations. Illustrated chapters cover a wide range of topics, including plant reproductive systems, germplasm for breeding, molecular breeding, the common objectives of plant breeders, marketing and societal issues, and more. Now in its third edition, this essential textbook contains extensively revised content that reflects recent advances and current practices. Substantial updates have been made to its molecular genetics and breeding sections, including discussions of new breeding techniques such as zinc finger nuclease, oligonucleotide directed mutagenesis, RNA-dependent DNA methylation, reverse breeding, genome editing, and others. A new table enables efficient comparison of an expanded list of molecular markers, including Allozyme, RFLPs, RAPD, SSR, ISSR, DAMD, AFLP, SNPs and ESTs. Also, new and updated “Industry Highlights” sections provide examples of the practical application of plant breeding methods to real-world problems. This new edition: Organizes topics to reflect the stages of an actual breeding project Incorporates the most recent technologies in the field, such as CRSPR genome edition and grafting on GM stock Includes numerous illustrations and end-of-chapter self-assessment questions, key references, suggested readings, and links to relevant websites Features a companion website containing additional artwork and instructor resources Principles of Plant Genetics and Breeding offers researchers and professionals an invaluable resource and remains the ideal textbook for advanced undergraduates and graduates in plant science, particularly those studying plant breeding, biotechnology, and genetics.


The Amaranth Genome

The Amaranth Genome
Author: Dinesh Adhikary
Publisher: Springer Nature
Total Pages: 181
Release: 2021-06-01
Genre: Science
ISBN: 3030723658

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This book describes the development of genetic resources in amaranths, with a major focus on genomics, reverse, and forward genetics tools and strategies that have been developed for crop improvement. Amaranth is an ancient crop native to the New World. Interest in amaranths is being renewed, due to their adaptability, stress tolerance, and nutritional value. There are about 65 species in the genus, including Amaranthus caudatus L., A. cruentus L., and A. hypochondriacus L., which are primarily grown as protein-rich grains or pseudocereals. The genus also includes major noxious weeds (e.g., A. palmeri). The amaranths are within the Caryophyllales order and thus many species (e.g., A. tricolor) produce red (betacyanin) or yellow (betaxanthin) betalain pigments, which are chemically distinct from the anthocyanins responsible for red pigmentation in other plants. A. hypochondriacus, which shows disomic inheritance (2n = 32; n= 466 Mb), has been sequenced and annotated with 23,059 protein-coding genes. Additional members of the genus are now also been sequenced including weedy amaranths, other grain amaranths, and their putative progenitors.