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Plant Omics: Trends and Applications

Plant Omics: Trends and Applications
Author: Khalid Rehman Hakeem
Publisher: Springer
Total Pages: 522
Release: 2016-08-23
Genre: Science
ISBN: 3319317032

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To comprehend the organizational principle of cellular functions at diff erent levels, an integrative approach with large-scale experiments, the so-called ‘omics’ data including genomics, transcriptomics, proteomics, and metabolomics, is needed. Omics aims at the collective characterization and quantifi cation of pools of biological molecules that translate into the structure, function, and dynamics of an organism or organisms. Currently, omics is an essential tool to understand the molecular systems that underlie various plant functions. Furthermore, in several plant species, the development of omicsresources has progressed to address the particular biological properties of individual species. Integration of knowledge from omics-based research is an emerging issue as researchers seek to identify significance, gain biological insights and promote translational research. From these perspectives, we intend to provide the emerging aspects of plant systems research based on omics and bioinformatics analyses together with their associated resources and technological advances. Th e present book covers a wide range of omics topics, and discusses the latest trends and application area of plant sciences. In this volume, we have highlighted the working solutions as well as open problems and future challenges in plant omics studies. We believe that this book will initiate and introduce readers to state-of-the-art developments and trends in omics-driven research.


PlantOmics: The Omics of Plant Science

PlantOmics: The Omics of Plant Science
Author: Debmalya Barh
Publisher: Springer
Total Pages: 839
Release: 2015-03-18
Genre: Science
ISBN: 8132221729

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PlantOmics: The Omics of Plant Science provides a comprehensive account of the latest trends and developments of omics technologies or approaches and their applications in plant science. Thirty chapters written by 90 experts from 15 countries are included in this state-of-the-art book. Each chapter describes one topic/omics such as: omics in model plants, spectroscopy for plants, next generation sequencing, functional genomics, cyto-metagenomics, epigenomics, miRNAomics, proteomics, metabolomics, glycomics, lipidomics, secretomics, phenomics, cytomics, physiomics, signalomics, thiolomics, organelle omics, micro morphomics, microbiomics, cryobionomics, nanotechnology, pharmacogenomics, and computational systems biology for plants. It provides up to date information, technologies, and their applications that can be adopted and applied easily for deeper understanding plant biology and therefore will be helpful in developing the strategy for generating cost-effective superior plants for various purposes. In the last chapter, the editors have proposed several new areas in plant omics that may be explored in order to develop an integrated meta-omics strategy to ensure the world and earth’s health and related issues. This book will be a valuable resource to students and researchers in the field of cutting-edge plant omics.


OMICS

OMICS
Author: Debmalya Barh
Publisher: CRC Press
Total Pages: 721
Release: 2013-03-26
Genre: Medical
ISBN: 1466562811

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With the advent of new technologies and acquired knowledge, the number of fields in omics and their applications in diverse areas are rapidly increasing in the postgenomics era. Such emerging fields—including pharmacogenomics, toxicogenomics, regulomics, spliceomics, metagenomics, and environomics—present budding solutions to combat global challenges in biomedicine, agriculture, and the environment. OMICS: Applications in Biomedical, Agricultural, and Environmental Sciences provides valuable insights into the applications of modern omics technologies to real-world problems in the life sciences. Filling a gap in the literature, it offers a broad, multidisciplinary view of current and emerging applications of omics in a single volume. Written by highly experienced active researchers, each chapter describes a particular area of omics and the associated technologies and applications. Topics covered include: Proteomics, epigenomics, and pharmacogenomics Toxicogenomics and the assessment of environmental pollutants Applications of plant metabolomics Nutrigenomics and its therapeutic applications Microalgal omics and omics approaches in biofuel production Next-generation sequencing and omics technology for transgenic plant analysis Omics approaches in crop improvement Engineering dark-operative chlorophyll synthesis Computational regulomics Omics techniques for the analysis of RNA splicing New fields, including metagenomics, glycomics, and miRNA Breast cancer biomarkers for early detection Environomics strategies for environmental sustainability This timely book explores a wide range of omics application areas in the biomedical, agricultural, and environmental sciences. Throughout, it highlights working solutions as well as open problems and future challenges. Demonstrating the diversity of omics, it introduces readers to state-of-the-art developments and trends in omics-driven research.


Plant Omics and Crop Breeding

Plant Omics and Crop Breeding
Author: Sajad Majeed Zargar
Publisher:
Total Pages: 0
Release: 2017
Genre: Science
ISBN: 9781771884556

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Due to the advent of state-of-the-art technologies in the field of biotechnology, much progress has been achieved since the last decade. OMICS technologies are being extensively used to address various issues pertaining to agriculture. Recent advances in genomics, transcriptomics, proteomics, and metabolomics techniques have revolutionized the understanding of genetic response of plants to various biotic and abiotic stresses. Strategic application of this revolutionary technology will eventually lead towards attaining sustainability in agriculture. This new book, Plant OMICS and Crop Breeding, addresses this important issue.


Omics in Plant Breeding

Omics in Plant Breeding
Author: Aluízio Borém
Publisher: Wiley-Blackwell
Total Pages: 248
Release: 2014-08-25
Genre: Science
ISBN: 9781118820995

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OMICS Applications in Crop Science

OMICS Applications in Crop Science
Author: Debmalya Barh
Publisher: CRC Press
Total Pages: 719
Release: 2017-04-30
Genre:
ISBN: 9781138074767

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Merging topical data from recently published review and research articles, as well as the knowledge and insight of industry experts, Omics Applications in Crop Science delves into plant science, and various technologies that use omics in agriculture. This book concentrates on crop breeding and environmental applications, and examines the applications of various omics technologies including genomics, transcriptomics, proteomics, metabolomics to important agronomic, horticultural, medicinal, plantation, fiber, forage, and bioenergy crops. It covers the application of omics technologies in several important crops, including cereal, and pulse. It explores the brassica species, drought tolerance in rice, and genetic engineering of the potato. The book discusses temperate fruits; and omics of medicinal plants, the metabolomics of Catharanthus roseus and how the medicinally important alkaloids of the plant are produced, as well as the omics of another important medicinal plant, Withania somnifera. It examines floriculture, the omics advances in tea, and omics strategies in improving the fiber qualities of cotton. It provides omics-related information on forest trees and forage crops, and offers a detailed account on how omics technologies are applicable in molecular farming, along with associated issues such as commercial aspects of molecular farming, clinical trials of plant-produced pharmaceuticals, regulatory issues and intellectual property rights. Written as a resource for plant biologists, plant breeders, agriculture scientists, researchers and college students studying various fields in agriculture, and the agri industries, OMICS Applications in Crop Science compiles the latest research in this essential field of modern crop and plant science utilizing various omics technologies and their applications in a number of important crops/plants from agronomy, pomology, olericulture, floriculture, medicinal plants, plantation and energy crops, agro-forestry, and more.


Integrative Omics

Integrative Omics
Author: Manish Kumar Gupta
Publisher: Elsevier
Total Pages: 434
Release: 2024-05-10
Genre: Science
ISBN: 0443160937

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Integrative Omics: Concepts, Methodology and Applications provides a holistic and integrated view of defining and applying network approaches, integrative tools, and methods to solve problems for the rationalization of genotype to phenotype relationships. The reference includes a range of chapters in a systemic ‘step by step’ manner, which begins with the basic concepts from Omic to Multi Integrative Omics approaches, followed by their full range of approaches, applications, emerging trends, and future trends. All key areas of Omics are covered including biological databases, sequence alignment, pharmacogenomics, nutrigenomics and microbial omics, integrated omics for Food Science and Identification of genes associated with disease, clinical data integration and data warehousing, translational omics as well as omics technology policy and society research. Integrative Omics: Concepts, Methodology and Applications highlights the recent concepts, methodologies, advancements in technologies and is also well-suited for researchers from both academic and industry background, undergraduate and graduate students who are mainly working in the area of computational systems biology, integrative omics and translational science. The book bridges the gap between biological sciences, physical sciences, computer science, statistics, data science, information technology and mathematics by presenting content specifically dedicated to mathematical models of biological systems. Provides a holistic, integrated view of a defining and applying network approach, integrative tools, and methods to solve problems for rationalization of genotype to phenotype relationships Offers an interdisciplinary approach to Databases, data analytics techniques, biological tools, network construction, analysis, modeling, prediction and simulation of biological systems leading to ‘translational research’, i.e., drug discovery, drug target prediction, and precision medicine Covers worldwide methods, concepts, databases, and tools used in the construction of integrated pathways


Applications of artificial intelligence, machine learning, and deep learning in plant breeding

Applications of artificial intelligence, machine learning, and deep learning in plant breeding
Author: Maliheh Eftekhari
Publisher: Frontiers Media SA
Total Pages: 246
Release: 2024-05-29
Genre: Science
ISBN: 2832549713

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Artificial Intelligence (AI) is an extensive concept that can be interpreted as a concentration on designing computer programs to train machines to accomplish functions like or better than hu-mans. An important subset of AI is Machine Learning (ML), in which a computer is provided with the capacity to learn its own patterns instead of the patterns and restrictions set by a human programmer, thus improving from experience. Deep Learning (DL), as a class of ML techniques, employs multilayered neural networks. The application of AI to plant science research is new and has grown significantly in recent years due to developments in calculation power, proficien-cies of hardware, and software progress. AI algorithms try to provide classifications and predic-tions. As applied to plant breeding, particularly omics data, ML as a given AI algorithm tries to translate omics data, which are intricate and include nonlinear interactions, into precise plant breeding. The applications of AI are extending rapidly and enhancing intensely in sophistication owing to the capability of rapid processing of huge and heterogeneous data. The conversion of AI techniques into accurate plant breeding is of great importance and will play a key role in the new era of plant breeding techniques in the coming years, particularly multi-omics data analysis. Advancements in plant breeding mainly depend upon developing statistical methods that harness the complicated data provided by analytical technologies identifying and quantifying genes, transcripts, proteins, metabolites, etc. The systems biology approach used in plant breeding, which integrates genomics, transcriptomics, proteomics, metabolomics, and other omics data, provides a massive amount of information. It is essential to perform accurate statistical analyses and AI methods such as ML and DL as well as optimization techniques to not only achieve an understanding of networks regulation and plant cell functions but develop high-precision models to predict the reaction of new Genetically Modified (GM) plants in special conditions. The constructed models will be of great economic importance, significantly reducing the time, labor, and instrument costs when finding optimized conditions for the bio-exploitation of plants. This Research Topic covers a wide range of studies on artificial intelligence-assisted plant breeding techniques, which contribute to plant biology and plant omics research. The relevant sub-topics include, but are not restricted to, the following: • AI-assisted plant breeding using omics and multi-omics approaches • Applying AI techniques along with multi-omics to recognize novel biomarkers associated with plant biological activities • Constructing up-to-date ML modeling and analyzing methods for dealing with omics data related to different plant growth processes • AI-assisted omics techniques in the plant defense process • Combining AI-assisted omics and multi-omics techniques using plant system biology approaches • Combining bioinformatics tools with AI approaches to analyze plant omics data • Designing cutting-edge workflow and developing innovative AI biology methods for omics data analysis


Medicinal and Aromatic Plants

Medicinal and Aromatic Plants
Author: Tariq Aftab
Publisher: Academic Press
Total Pages: 466
Release: 2020-05-12
Genre: Science
ISBN: 0128227753

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Growing consumer interest in organic and herbal-based products has led to great demand in the botanicals industry in the past few years. However, the growing number of products utilizing medicinal and aromatic plants (MAPs) has threatened an estimated 9,000 medicinal plant species worldwide, making it critical to reevaluate their research and development, production, and utilization. Continuing advances in Omics methodologies and instrumentation are essential to understanding how plants cope with the dynamic nature of their growing environment, how yields and characteristics can be improved, and how to most effectively direct conservation efforts. With a focus on metabolomics, genomics, proteomics, transcriptomics, and more, Medicinal and Aromatic Plants: Expanding Their Horizons through Omics illustrates the genetic mechanisms of MAPs, providing a better understanding of MAPs conservation and methods to improve characteristics for medical applications. With an introduction on the role of MAPs in human health, subsequent chapters discuss using proteomics to increase MAP yields and plant quality, genome editing, and CRISPR/Cas9. A valuable resource for farmers, scientists, chemists, biochemists, pharmacists, and students interested in medicinal and aromatic plants and plant biology, Medicinal and Aromatic Plants: Expanding Their Horizons through Omics ensures readers have the background knowledge to put the necessary methodologies into practice themselves. Includes in-depth analysis of Omics technologies for the enhancement of MAPs Discusses applications of MAPs including their role in human health Written by world-wide leading experts in the field


Genetically Engineered Crops

Genetically Engineered Crops
Author: National Academies of Sciences, Engineering, and Medicine
Publisher: National Academies Press
Total Pages: 607
Release: 2017-01-28
Genre: Science
ISBN: 0309437385

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Genetically engineered (GE) crops were first introduced commercially in the 1990s. After two decades of production, some groups and individuals remain critical of the technology based on their concerns about possible adverse effects on human health, the environment, and ethical considerations. At the same time, others are concerned that the technology is not reaching its potential to improve human health and the environment because of stringent regulations and reduced public funding to develop products offering more benefits to society. While the debate about these and other questions related to the genetic engineering techniques of the first 20 years goes on, emerging genetic-engineering technologies are adding new complexities to the conversation. Genetically Engineered Crops builds on previous related Academies reports published between 1987 and 2010 by undertaking a retrospective examination of the purported positive and adverse effects of GE crops and to anticipate what emerging genetic-engineering technologies hold for the future. This report indicates where there are uncertainties about the economic, agronomic, health, safety, or other impacts of GE crops and food, and makes recommendations to fill gaps in safety assessments, increase regulatory clarity, and improve innovations in and access to GE technology.