Phylogenomic Data Acquisition PDF Download
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Author | : W. Bryan Jennings |
Publisher | : CRC Press |
Total Pages | : 245 |
Release | : 2016-12-12 |
Genre | : Science |
ISBN | : 1482235358 |
Download Phylogenomic Data Acquisition Book in PDF, ePub and Kindle
Phylogenomics is a rapidly growing field of study concerned with using genome-wide data—usually in the form of DNA sequence loci—to infer the evolution of genes, genomes, and the Tree of Life. Accordingly, this discipline connects many areas in biology including molecular and genomic evolution, systems biology, molecular systematics, phylogeography, conservation genetics, DNA barcoding, and others. With the advent of Next Generation Sequencing in addition to advances in computer hardware and software over the past decade, researchers can now generate unparalleled phylogenomic datasets that are helping to illuminate many areas in the life sciences. This book is an introduction to the principles and practices of gathering these data. Phylogenomic Data Acquisition: Principles and Practice is intended for a broad cross-section of biologists and anyone else interested in learning how to obtain phylogenomic data using the latest methods.
Author | : Rob DeSalle |
Publisher | : Birkhäuser |
Total Pages | : 414 |
Release | : 2013-12-01 |
Genre | : Science |
ISBN | : 3034881258 |
Download Techniques in Molecular Systematics and Evolution Book in PDF, ePub and Kindle
The amount of information that can be obtained by using molecular techniques in evolution, systematics and ecology has increased exponentially over the last ten years. The need for more rapid and efficient methods of data acquisition and analysis is growing accordingly. This manual presents some of the most important techniques for data acquisition developed over the last years. The choice and justification of data analysis techniques is also an important and critical aspect of modern phylogenetic and evolutionary analysis and so a considerable part of this volume addresses this important subject. The book is mainly written for students and researchers from evolutionary biology in search for methods to acquire data, but also from molecular biology who might be looking for information on how data are analyzed in an evolutionary context. To aid the user, information on web-located sites is included wherever possible. Approaches that will push the amount of information which systematics will gather in the
Author | : |
Publisher | : Academic Press |
Total Pages | : 342 |
Release | : 2017-11-17 |
Genre | : Science |
ISBN | : 0128132620 |
Download Fungal Phylogenetics and Phylogenomics Book in PDF, ePub and Kindle
Fungal Phylogenetics and Phylogenomics, Volume 100, the latest release in the Advances in Genetics series, presents users with new chapters that delve into such topics as the Advances of fungal phylogenomics and the impact on fungal systematics, Data crunching for fungal phylogenomics: insights into data collection and phylogenetic inference based on genome data for fungi, Genomic and epigenomic traits of emerging fungal pathogens, Advances in fungal gene cluster diversity and evolution, Phylogenomics of Fusarium oxysporum species complex, Phylogenomic analyses of pathogenic yeasts, and the Phylogenetics and phylogenomics of rust fungi. The series continually publishes important reviews of the broadest interest to geneticists and their colleagues in affiliated disciplines, critically analyzing future directions. Critically analyzes future directions for the study of clinical genetics Written and edited by recognized leaders in the field Presents new medical breakthroughs that are occurring as a result of advances in our knowledge of genetics
Author | : Michael M. Miyamoto |
Publisher | : Oxford University Press |
Total Pages | : 369 |
Release | : 1991-11-14 |
Genre | : Science |
ISBN | : 0195361970 |
Download Phylogenetic Analysis of DNA Sequences Book in PDF, ePub and Kindle
With increasing frequency, systematic and evolutionary biologists have turned to the techniques of molecular biology to complement their traditional morphological and anatomical approaches to questions of the historical relationship and descent among groups of animals and plants. In particular, the comparative analysis of DNA sequences is becoming a common and important focus of research attention today. The objective of this volume is to survey the emerging field of molecular systematics of DNA sequences, and to appraise the strengths and limitations of the different approaches yielded by these techniques. The contributors are an internationally recognized group of investigators from different schools and disciplines who critically address a diversity of crucial questions about DNA systematics, including DNA sequence data acquisition, phylogenetic inference, congruence and consensus problems, limitations of molecular data, and the integration of molecular and morphological data sets. The work will interest all botanists and zoologists involved in systematics, taxonomy, and evolution.
Author | : Calyampudi Radhakrishna Rao |
Publisher | : World Scientific |
Total Pages | : 213 |
Release | : 1997 |
Genre | : Mathematics |
ISBN | : 9810231113 |
Download Statistics and Truth Book in PDF, ePub and Kindle
Written by one of the top most statisticians with experience in diverse fields of applications of statistics, the book deals with the philosophical and methodological aspects of information technology, collection and analysis of data to provide insight into a problem, whether it is scientific research, policy making by government or decision making in our daily lives.The author dispels the doubts that chance is an expression of our ignorance which makes accurate prediction impossible and illustrates how our thinking has changed with quantification of uncertainty by showing that chance is no longer the obstructor but a way of expressing our knowledge. Indeed, chance can create and help in the investigation of truth. It is eloquently demonstrated with numerous examples of applications that statistics is the science, technology and art of extracting information from data and is based on a study of the laws of chance. It is highlighted how statistical ideas played a vital role in scientific and other investigations even before statistics was recognized as a separate discipline and how statistics is now evolving as a versatile, powerful and inevitable tool in diverse fields of human endeavor such as literature, legal matters, industry, archaeology and medicine.Use of statistics to the layman in improving the quality of life through wise decision making is emphasized.
Author | : Michael M. Miyamoto |
Publisher | : |
Total Pages | : 0 |
Release | : 2023 |
Genre | : DNA |
ISBN | : 9780197701829 |
Download Phylogenetic Analysis of DNA Sequences Book in PDF, ePub and Kindle
The objective of this volume is to survey the emerging field of molecular systematics of DNA sequences. It focuses on the topics of DNA sequence data acquisition, phylogenetic inference, congruence and consensus problems, limitations of molecular data and integration of molecular data sets.
Author | : Scott Orland Rogers |
Publisher | : CRC Press |
Total Pages | : 376 |
Release | : 2022-07-11 |
Genre | : Science |
ISBN | : 1000596389 |
Download Molecular Analyses Book in PDF, ePub and Kindle
DNA and RNA extraction methods from a variety of tissues and samples are now routine, including extraction from single cells. Many methods are now automated. Sequencing efficiency has reached the point where it is now possible to obtain gigabases of data, both quickly and inexpensively. Such methods permit the identification of gene versions, including those associated with disease (e.g. small nucleotide polymorphism analyses, or SNPs). The general public as well as clinicians can now access a wide variety of literature on the molecular bases of diseases, allowing them to better assess disease risks and treatments. This volume concentrates on medically-focused methods, and therefore the major audience will be medical professionals, students, and those involved in medically-related research endeavors. There are also papers in this volume dealing specifically with methods developed to analyze large sequence data sets. Many methods reviewed herein are more broadly applicable to other fields in biology, chemistry, bioinformatics, and bioengineering, and are intended for a broad readership. Key Features Summarizes nucleic acid extractions from a wide variety of tissues and cells Describes processes of nucleic acid preservation Reviews forensic sampling, detection of nucleic acids, and delivery of nucleic acids to multicellular organisms Provides essential guidance for sequencing, sequence analysis, database searches, and phylogenetic analyses Includes additional methods useful for analysis of nucleic acids and proteins Related Titles DeSalle, et al. Phylogenomics: A Primer (ISBN 978-0-3670-2849-7). Jennings, W. B. Phylogenomic Data Acquisition: Principles and Practice (ISBN 978-0-3678-6980-9). Wang, X. Next-Generation Sequencing Data Analysis (ISBN 978-1-4822-1788-9) Sung, W.-K. Algorithms for Next-Generation Sequencing (ISBN 978-0-3676-5797-0)
Author | : Arthur Martin Nettling |
Publisher | : |
Total Pages | : 0 |
Release | : 2017* |
Genre | : |
ISBN | : |
Download New Approaches for De-novo Motif Discovery Using Phylogenetic Footprinting Book in PDF, ePub and Kindle
Bioinformatics; machine learning; phylogenetic footprinting; model selection; transcription factor binding sites; de-novo motif discovery; statistical dependencies; binding-affinity bias; Visualization of sequence motifs.
Author | : Paul A. Hohenlohe |
Publisher | : Springer Nature |
Total Pages | : 559 |
Release | : 2020-12-09 |
Genre | : Science |
ISBN | : 3030634892 |
Download Population Genomics: Wildlife Book in PDF, ePub and Kindle
Population genomics is revolutionizing wildlife biology, conservation, and management by providing key and novel insights into genetic, population and landscape-level processes in wildlife, with unprecedented power and accuracy. This pioneering book presents the advances and potential of population genomics in wildlife, outlining key population genomics concepts and questions in wildlife biology, population genomics approaches that are specifically applicable to wildlife, and application of population genomics in wildlife population and evolutionary biology, ecology, adaptation and conservation and management. It is important for students, researchers, and wildlife professionals to understand the growing set of population genomics tools that can address issues from delineation of wildlife populations to assessing their capacity to adapt to environmental change. This book brings together leading experts in wildlife population genomics to discuss the key areas of the field, as well as challenges, opportunities and future prospects of wildlife population genomics.
Author | : Rob DeSalle |
Publisher | : CRC Press |
Total Pages | : 415 |
Release | : 2020-08-18 |
Genre | : Computers |
ISBN | : 1000080390 |
Download Phylogenomics Book in PDF, ePub and Kindle
Phylogenomics: A Primer, Second Edition is for advanced undergraduate and graduate biology students studying molecular biology, comparative biology, evolution, genomics, and biodiversity. This book explains the essential concepts underlying the storage and manipulation of genomics level data, construction of phylogenetic trees, population genetics, natural selection, the tree of life, DNA barcoding, and metagenomics. The inclusion of problem-solving exercises in each chapter provides students with a solid grasp of the important molecular and evolutionary questions facing modern biologists as well as the tools needed to answer them.