Overwinter Survival And Movement Of Juvenile Coho Salmon Oncorhynchus Kisutch In Relation To Large Woody Debris And Low Velocity Habitat In Northern California Streams PDF Download

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Overwinter Survival and Movement of Juvenile Coho Salmon (Oncorhynchus Kisutch) in Relation to Large Woody Debris and Low-velocity Habitat in Northern California Streams

Overwinter Survival and Movement of Juvenile Coho Salmon (Oncorhynchus Kisutch) in Relation to Large Woody Debris and Low-velocity Habitat in Northern California Streams
Author: John D. Deibner-Hanson
Publisher:
Total Pages: 96
Release: 2019
Genre: Coho salmon
ISBN:

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Some studies suggest that Coho Salmon populations are limited by overwinter survival as a result of insufficient winter habitat. While many small-scale projects aim to define reach and basin-level habitat requirements for Coho Salmon, large-scale studies that assess multiple independent populations remain few. For my research, I quantified large woody debris (LWD) by volume and low-velocity rearing habitat (LVH) as percent area in three coastal watersheds of similar size in northern California to untangle the relationships between Coho Salmon overwinter survival, emigration timing and specific winter habitats. I used mark-recapture techniques with PIT tags to formulate Cormack-Jolly-Seber models for each of three years (2013-2015) to (1) estimate apparent overwinter survival of juvenile Coho Salmon populations, (2) determine to what extent outmigration timing varies among basins, and (3) evaluate the relationships between reach-specific survival, movement and winter habitat. LWD volume ranged from 47.8 to 109.9 cubic meters per kilometer among stream reaches while LVH area spanned from 9.3% to 23.6% of total stream area per reach. Effects of LWD on apparent overwinter survival and early emigration were absent during all three years of the study. Effects of LVH were not observed during 2013 and 2014. In 2015, LVH correlated positively with apparent overwinter survival and negatively with emigration. Larger Coho Salmon had higher apparent overwinter survival rates than small fish, whereas smaller fish had greater emigrations rates before spring. Mean apparent overwinter survival varied by basin from 0.052 to 0.567 but basins maintained consistency across years. Early emigration rates ranged even further by basin (0.023-0.773). Variation in both apparent overwinter survival and early emigration was much greater among basins than within basins. A lot remains to be learned regarding how habitat affects the migratory behavior of Coho Salmon in California and these results suggest the effects may vary significantly by stream. The drastic life history differences observed in neighboring Coho Salmon populations demonstrate the plasticity in a species once thought to be relatively inflexible. Moving forward, incorporating multi-basin approaches should be considered when evaluating freshwater survival and movement to inform large-scale restoration and conservation.


Overwinter Survival and Redistribution of Juvenile Coho Salmon, Oncorhynchus Kisutch, in Prairie Creek, California

Overwinter Survival and Redistribution of Juvenile Coho Salmon, Oncorhynchus Kisutch, in Prairie Creek, California
Author: Tancy R. Moore
Publisher:
Total Pages: 120
Release: 2014
Genre: Coho salmon
ISBN:

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During the summer of 2012, juvenile coho salmon (Oncorhynchus kisutch) in Prairie Creek, California and its tributaries were marked using PIT tags to monitor winter redistribution and estimate overwinter growth and survival. Since a substantial number of juvenile coho salmon in the Prairie Creek watershed may rear in freshwater for two years, a scale sample analysis was also conducted to determine what proportion of the 2012 population was exhibiting a two-year freshwater residency. The Cormack-Jolly-Seber model and Program MARK were used to examine how rearing location, size at tagging, habitat unit depth, and volume of large woody debris affected overwinter survival. I found that 98.6% of juveniles in 2012 were age 0, and apparent overwinter survival was 39.4%. On average, juveniles experienced a 0.13% increase in length per day and 0.35% increase in weight per day, with the smallest fish experiencing the highest growth rates. Fish that were larger in fall and tagged closer to the confluence of Prairie Creek had higher apparent overwinter survival, but habitat depth and quantity of large woody debris did not appear to impact survival probability. Large juveniles appeared to have low survival near the confluence of Prairie Creek; however, the model could not distinguish deaths from emigration, meaning the high mortality rate for large juveniles near the mouth may actually reflect a pattern of early emigration from the study area. Since juveniles that migrate to sea prior to spring trapping are typically treated as mortalities, these results have important implications for the way managers estimate freshwater survival for coho salmon.


A Time- and State-based Approach to Estimate Winter Movement and Survival of Juvenile Coho Salmon (Oncorhynchus Kisutch) in Freshwater Creek, California

A Time- and State-based Approach to Estimate Winter Movement and Survival of Juvenile Coho Salmon (Oncorhynchus Kisutch) in Freshwater Creek, California
Author: Nicholas Van Vleet
Publisher:
Total Pages: 101
Release: 2019
Genre: Coho salmon
ISBN:

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Accounting for life history diversity and overwinter survival of juvenile Coho Salmon is important to inform restoration and recovery efforts for this threatened species. Multiple seaward migration patterns of Coho Salmon have been identified, including spring fry migrants, fall and winter parr migrants, and spring smolt migrants. Previous studies have indicated that spring smolt migrants have low overwinter survival rates while they are rearing in upstream habitats, suggesting that freshwater overwinter survival may be one factor that limits smolt production. However, previous research did not account for the early emigration of fall and winter parr migrants from the study area, which most likely negatively biased their overwinter survival estimates. Furthermore, previous mark-recapture methods aggregated continuous detection data into course seasonal scales in order to estimate movement and survival. In an effort to refine previous methodology, I developed a multi-state model that allowed for estimation of early emigration and survival rates in space and time by having weekly time-varying occasions paired with discrete spatial states.


The Winter Distribution, Movement, and Smolt Transformation of Juvenile Coho Salmon in an Oregon Coastal Stream

The Winter Distribution, Movement, and Smolt Transformation of Juvenile Coho Salmon in an Oregon Coastal Stream
Author: Jeffrey D. Rodgers
Publisher:
Total Pages: 122
Release: 1986
Genre: Coho salmon
ISBN:

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The abundance of the 1982 brood of juvenile coho salmon (Oncorhynchus kisutch) was determined in August 1983, and January and April 1984 at 20 study sites spread throughout Knowles Creek, an Oregon coastal watershed. The timing of emigration of juvenile coho from the watershed was monitored from October 1983 through June 1984. Condition factor, fork length, and gill (Na+K)-ATPase activity were measured in migrants, a captive group of Knowles Creek juvenile coho held in the laboratory, and nonmigrant fish periodically sampled from the stream. Skin guanine levels were also measured in migrant and nonmigrant groups. Juvenile coho abundance in January was significantly correlated with abundance in August. Wood volume and amount of undercut streambank were the pair of physical variables that best explained variation in the number of fish per square meter or per cubic meter in January. Two debris torrent ponds in the middle of the watershed contained large amounts of woody debris and were the most heavily used overwintering habitats for juvenile coho in the Knowles Creek. Few juvenile coho overwintered in the lower half of watershed, an area lacking woody debris. Peaks in outmigration occurred in November and May. Approximately 24% of the total number of migrants emigrated in November. Fish that reared in two of three third-order areas in summer, together with fish from the lower (fifth-order) half of the mainstem, were the first to leave the watershed. While lack of winter habitat may have been the cause of migration from the lower mainstem, low summer streamflows may have caused early migration from the low order sites. Gill (Na+K)-ATPase activity of migrants rose gradually from a low in January to a peak at the end of the study in June. Mean gill (Na+K)-ATPase activity of nonmigrants was only significantly lower than that of migrant fish during April. Gill (Na+K)-ATPase of captives was similar to that of nonmigrants until it peaked during the last two weeks in April, after which the activity fell below that of migrants or nonmigrants. Condition factor of nonmigrant fish was higher than either migrants or captives throughout the study. Migrant skin guanine levels rose sharply during the first two weeks in April and continued to rise until the end of the study in June. Approximately 8,300 juvenile coho, 44% of the estimated number of juvenile coho present in Knowles Creek in August, migrated from the watershed by the following June. An estimated 9% of the August population migrated as smolts after April 1.


A Landscape Approach to Determining and Predicting Juvenile Coho Salmon (Oncorhynchus Kisutch) Movement Timing and Growth Patterns Prior to Ocean Entry

A Landscape Approach to Determining and Predicting Juvenile Coho Salmon (Oncorhynchus Kisutch) Movement Timing and Growth Patterns Prior to Ocean Entry
Author:
Publisher:
Total Pages: 124
Release: 2016
Genre: Coho salmon
ISBN:

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Coho salmon (Oncorhynchus kisutch) rely on unique habitats during the winter season, which may dictate how much individuals may growth and when migration from freshwater rearing habitat to the ocean occurs. Here I analyze movement timing and growth patterns for coho salmon through a field-based study and a literature review. For the field portion, I examined hatchery-stocked juvenile coho salmon across four stream basins in the Russian River watershed, California to determine the relative importance of climate, landscape, and fish size metrics in predicting movement and growth patterns over a winter rearing and spring smolt outmigration time period (December 2014-June 2015). I observed three unique movement strategies: winter parr movement, spring smolt movement, and inter-tributary movement. Movement was predicted in relation to daily temperature and precipitation, followed by in-stream and upslope basin conditions in random forest modeling. Specifically, fish that moved later were associated with basins that contained higher productivity and low-gradient floodplain habitats, while fish that moved earlier came from streams that lacked invertebrate prey and had limited low-gradient rearing habitat. Fish size and timing of movement were the primary predictors of growth, with relatively larger fish in the spring growing faster than fish that were relatively smaller prior to winter. These relationships suggest that hatchery-release fish are still highly influenced by environmental conditions once released, especially in terms of initial seasonal movement, and that watershed conditions should be considered when utilizing hatchery-rearing programs to supplement wild fish populations. In North America, coho salmon populations are distributed from Alaska through California, and may exhibit unique movement and growth patterns in relationship to population-scale vulnerability (Endangered Species Act listing), basin area, and availability and types of rearing habitat. For the second part of my thesis, I conducted a literature review to assess what factors are commonly considered in predicting movement and growth patterns for these fish, as well as the types (season and life stage) and number of movement strategies reported. Eighteen studies were summarized, of which sixteen identified unique movement strategies, ranging from one to four. Despite a wide range of basin areas and latitudes, winter parr and spring smolt movements were commonly observed, with authors primarily relating these behaviors to in-stream habitat and fish size metrics. Additionally, growth was linked positively and primarily with off-channel winter rearing, which may outweigh the importance of fish size in predicting growth when high quality rearing habitats are available during the winter season. Recognizing movement timing diversity and its drivers can help recover threatened coho salmon populations. More widely distributed populations may have unique phenotypic expressions based on localized genetic and environmental interactions, increasing diversity and overall stability across the population, a concept known as the portfolio effect. Understanding fish-habitat relationships can aid recovery efforts by providing a framework of climatic and watershed conditions that support unique behaviors, even in already severely limited populations.


Effects of Large Wood Restoration on Coho Salmon in a Northern California Watershed

Effects of Large Wood Restoration on Coho Salmon in a Northern California Watershed
Author: Natalie B. Okun
Publisher:
Total Pages: 64
Release: 2021
Genre: Coho salmon
ISBN:

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Substantial time, money, and effort are invested in river and stream restoration projects to aid in the recovery of imperiled salmonid populations, but there is little evidence that these efforts have had lasting positive impacts on juvenile fish growth and survival. To assess the effectiveness of large woody debris (LWD) restoration, which is one of the most common restoration practices, I evaluated the growth and survival response of endangered Central California Coast coho salmon (Oncorhynchus kisutch) in a paired watershed before-after impact-control (BACI) study. To determine if LWD supplementation influenced coho salmon growth and survival, two neighboring, similar watersheds in Northern California were selected to conduct long-term monitoring of both fish and habitat metrics. Fish and habitat monitoring consisted of summer and fall electrofishing surveys, juvenile outmigrant trapping, passive integrated transponder (PIT) array detections, and summer and winter habitat surveys. After three years of pre-treatment monitoring in both watersheds, Pudding Creek (the ‘experimental’ watershed) was supplemented with 1,365 cubic meters of LWD throughout 80% of the mainstem anadromous spawning habitat in 2015. Post-treatment monitoring then continued in both watersheds until 2020. Though wood density increased more in the experimental watershed (31%) compared to the control watershed (13%) following wood treatment, there was no winter slow water habitat response, meaning the limiting factor for coho populations in these watersheds was not addressed. I used generalized linear mixed effects models with year as a random effect to evaluate summer and winter growth response to wood supplementation. I found that summer and winter growth were positively associated with wood, but the experimental watershed had consistently higher winter growth compared to the control. The wood treatment response did not align with the biological response; wood density increased more in the experimental watershed, but growth did not increase more in the experimental compared to the control watershed. To estimate winter survival rates, I used a Cormack-Jolly-Seber (CJS) model. I found that winter survival increased through time in the control while it stayed level in the experimental watershed. This thesis illuminates the utility of having a paired watershed study design with habitat and biological response analysis in tandem. The results from this experiment lead to a variety of questions and concerns relating to the treatment design and how treatment is paired with the study design. This thesis provides a foundation for long-term monitoring to understand the effects of restoration efforts for a species at the southern extent of its range. This is particularly important given the at-risk status of these salmonid populations and the additional threats these fish face from a changing climate.


Influence of Body Size, Intra- and Inter-specific Salmonid Densities, and Habitat on Overwinter Survival of Juvenile Coho Salmon (Oncorhynchus Kisutch) in Prairie Creek, California

Influence of Body Size, Intra- and Inter-specific Salmonid Densities, and Habitat on Overwinter Survival of Juvenile Coho Salmon (Oncorhynchus Kisutch) in Prairie Creek, California
Author: Peter Drobny
Publisher:
Total Pages: 136
Release: 2016
Genre: Coho salmon
ISBN:

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I evaluated the effects of fish length, habitat attributes, and densities of Coho Salmon and trout on overwinter survival of juvenile Coho Salmon in Prairie Creek, California. Survival of PIT tagged juvenile Coho Salmon was estimated using a Cormack-Jolly-Seber Model based on mark-recapture data from seine net captures, PIT tag antenna detections, and a rotary screw trap. A zero inflated Poisson binomial model, based on a 2-pass snorkeling methodology, estimated pool-specific abundance of juvenile Coho Salmon while accounting for variable snorkeler detection efficiency as well as estimating the effect of habitat attributes on density. Trout densities were obtained using raw snorkel counts. Overwinter survival of PIT tagged juvenile Coho Salmon during 2014-2015 was estimated to be 0.35 (95% CI 0.30-0.40), similar to survival estimates for Prairie Creek in previous years. Survival increased with fish length and decreased with intraspecific density. There was no evidence that density of small (150 mm) trout, large (150 mm) trout, or habitat attributes influenced survival. Estimated density of juvenile Coho Salmon in pools averaged 0.5 fish/m2 (n= 159) and ranged from 0- 2.2 fish/m2, consistent with regional density values within the Pacific Northwest. Juvenile Coho Salmon density estimates declined with cover complexity and watershed area, and increased with pool depth. Probability of detecting a fish while snorkeling varied with habitat features and among observers; estimated probability of detection averaged 0.63 (n=318) and ranged from 0.19 to 0.96 across snorkel passes.This study not only continued valuable monitoring of juvenile Coho Salmon overwinter survival in the southern portion of their range, but also determined factors that may be contributing to survival rates. In addition, this study successfully applied a relatively new hierarchical modeling technique (N-mixture model) to estimate juvenile Coho Salmon densities using non-invasive methods.


Juvenile Coho Salmon Movement, Growth and Survival in a Coastal Basin of Southern Oregon

Juvenile Coho Salmon Movement, Growth and Survival in a Coastal Basin of Southern Oregon
Author: Adam D. Weybright
Publisher:
Total Pages: 110
Release: 2011
Genre: Coho salmon
ISBN:

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Juvenile salmonids display highly variable spatial and temporal movement patterns that are influenced by density dependent (e.g., competition, predation) and density independent (e.g., genetics, stream discharge, physical habitat conditions) factors. The effects of these factors differ with fish life history stage, but will ultimately affect how salmonids utilize freshwater nursery habitats and influence their size at smolting. Although juvenile coho salmon (Oncorhynchus kisutch) (Walbaum 1792) movement patterns and their relationships with body mass have been previously examined, the temporal scale considered in most studies has been within individual seasonal periods. In this study, we monitored the movement of PIT tagged juvenile coho salmon throughout the period of freshwater residence in an entire southern Oregon coastal basin to identify the prevalent sedentary and mobile strategies these fish may adopt and to examine possible relationships between those strategies and fish body mass, growth and survival. Specific objectives include: 1) to describe juvenile coho salmon movement strategies and patterns during the freshwater residence period; 2) to determine the relative proportions of juvenile coho salmon that exhibit each movement strategy; 3) to establish whether juvenile coho salmon body mass and growth rates are related with a set of habitat variables recorded during this study; 4) to determine whether coho salmon body mass or growth rates are related to movement strategy; and 5) to evaluate whether winter survival of juvenile coho salmon is associated with movement strategy. Results revealed seasonally and spatially variable movement. More than half of coho salmon tracked throughout the period of freshwater residence exhibited movement behavior that differed between summer and winter seasons. Within seasonal periods, coho salmon in tidally affected reaches exhibited greater prevalence of mobile behavior relative to those in riverine reaches. Regression analysis indicated coho biomass density, habitat unit structural complexity and size at tagging were important in predicting summer growth of coho salmon. Juvenile coho salmon that were mobile during summer were either larger or no different in body mass in early summer relative to fish that exhibited sedentary behavior. Similarly, no consistent differences were observed between sedentary and mobile coho salmon in regards to summer growth. Coho salmon that were sedentary in summer and winter experienced higher apparent winter survival than mobile fish in each season, though the reach in which an individual resided at the start of winter appeared to also affect survival. Coho salmon residing in the tide gate reservoir reach and mainstem headwater reaches experienced greatest apparent winter survival. These results indicate that juvenile coho salmon movement within a stream basin is spatially and temporally variable and that mobility does not necessarily indicate inferior competitive ability. In a broader context, variable movement patterns reflect the capacity for plastic behavior in salmonids and this research demonstrates the importance of maintaining seasonally diverse freshwater and estuarine nursery habitats for juvenile fish.