Ontologies With Python PDF Download
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| Author | : Lamy Jean-Baptiste |
| Publisher | : Apress |
| Total Pages | : 344 |
| Release | : 2021-01-01 |
| Genre | : Computers |
| ISBN | : 9781484265512 |
Download Ontologies with Python Book in PDF, ePub and Kindle
Use ontologies in Python, with the Owlready2 module developed for ontology-oriented programming. You will start with an introduction and refresher on Python and OWL ontologies. Then, you will dive straight into how to access, create, and modify ontologies in Python. Next, you will move on to an overview of semantic constructs and class properties followed by how to perform automatic reasoning. You will also learn about annotations, multilingual texts, and how to add Python methods to OWL classes and ontologies. Using medical terminologies as well as direct access to RDF triples is also covered. Python is one of the most used programming languages, especially in the biomedical field, and formal ontologies are also widely used. However, there are limited resources for the use of ontologies in Python. Owlready2, downloaded more than 60,000 times, is a response to this problem, and this book is the first one on the topic of using ontologies with Python. What You Will Learn Use Owlready2 to access and modify OWL ontologies in Python Publish ontologies on dynamic websites Perform automatic reasoning in Python Use well-known ontologies, including DBpedia and Gene Ontology, and terminological resources, such as UMLS (Unified Medical Language System) Integrate Python methods in OWL ontologies Who Is This Book For Beginner to experienced readers from biomedical sciences and artificial intelligence fields would find the book useful.
| Author | : Christophe Dessimoz |
| Publisher | : |
| Total Pages | : 298 |
| Release | : 2020-10-08 |
| Genre | : Science |
| ISBN | : 9781013267710 |
Download The Gene Ontology Handbook Book in PDF, ePub and Kindle
This book provides a practical and self-contained overview of the Gene Ontology (GO), the leading project to organize biological knowledge on genes and their products across genomic resources. Written for biologists and bioinformaticians, it covers the state-of-the-art of how GO annotations are made, how they are evaluated, and what sort of analyses can and cannot be done with the GO. In the spirit of the Methods in Molecular Biology book series, there is an emphasis throughout the chapters on providing practical guidance and troubleshooting advice. Authoritative and accessible, The Gene Ontology Handbook serves non-experts as well as seasoned GO users as a thorough guide to this powerful knowledge system. This work was published by Saint Philip Street Press pursuant to a Creative Commons license permitting commercial use. All rights not granted by the work's license are retained by the author or authors.
| Author | : Francisco M. Couto |
| Publisher | : Springer |
| Total Pages | : 98 |
| Release | : 2019-06-10 |
| Genre | : Medical |
| ISBN | : 3030138453 |
Download Data and Text Processing for Health and Life Sciences Book in PDF, ePub and Kindle
This open access book is a step-by-step introduction on how shell scripting can help solve many of the data processing tasks that Health and Life specialists face everyday with minimal software dependencies. The examples presented in the book show how simple command line tools can be used and combined to retrieve data and text from web resources, to filter and mine literature, and to explore the semantics encoded in biomedical ontologies. To store data this book relies on open standard text file formats, such as TSV, CSV, XML, and OWL, that can be open by any text editor or spreadsheet application. The first two chapters, Introduction and Resources, provide a brief introduction to the shell scripting and describe popular data resources in Health and Life Sciences. The third chapter, Data Retrieval, starts by introducing a common data processing task that involves multiple data resources. Then, this chapter explains how to automate each step of that task by introducing the required commands line tools one by one. The fourth chapter, Text Processing, shows how to filter and analyze text by using simple string matching techniques and regular expressions. The last chapter, Semantic Processing, shows how XPath queries and shell scripting is able to process complex data, such as the graphs used to specify ontologies. Besides being almost immutable for more than four decades and being available in most of our personal computers, shell scripting is relatively easy to learn by Health and Life specialists as a sequence of independent commands. Comprehending them is like conducting a new laboratory protocol by testing and understanding its procedural steps and variables, and combining their intermediate results. Thus, this book is particularly relevant to Health and Life specialists or students that want to easily learn how to process data and text, and which in return may facilitate and inspire them to acquire deeper bioinformatics skills in the future.
| Author | : Robert Arp |
| Publisher | : MIT Press |
| Total Pages | : 245 |
| Release | : 2015-08-28 |
| Genre | : Science |
| ISBN | : 026232959X |
Download Building Ontologies with Basic Formal Ontology Book in PDF, ePub and Kindle
An introduction to the field of applied ontology with examples derived particularly from biomedicine, covering theoretical components, design practices, and practical applications. In the era of “big data,” science is increasingly information driven, and the potential for computers to store, manage, and integrate massive amounts of data has given rise to such new disciplinary fields as biomedical informatics. Applied ontology offers a strategy for the organization of scientific information in computer-tractable form, drawing on concepts not only from computer and information science but also from linguistics, logic, and philosophy. This book provides an introduction to the field of applied ontology that is of particular relevance to biomedicine, covering theoretical components of ontologies, best practices for ontology design, and examples of biomedical ontologies in use. After defining an ontology as a representation of the types of entities in a given domain, the book distinguishes between different kinds of ontologies and taxonomies, and shows how applied ontology draws on more traditional ideas from metaphysics. It presents the core features of the Basic Formal Ontology (BFO), now used by over one hundred ontology projects around the world, and offers examples of domain ontologies that utilize BFO. The book also describes Web Ontology Language (OWL), a common framework for Semantic Web technologies. Throughout, the book provides concrete recommendations for the design and construction of domain ontologies.
| Author | : John Hebeler |
| Publisher | : John Wiley & Sons |
| Total Pages | : 662 |
| Release | : 2011-02-25 |
| Genre | : Computers |
| ISBN | : 1118080602 |
Download Semantic Web Programming Book in PDF, ePub and Kindle
The next major advance in the Web-Web 3.0-will be built on semantic Web technologies, which will allow data to be shared and reused across application, enterprise, and community boundaries. Written by a team of highly experienced Web developers, this book explains examines how this powerful new technology can unify and fully leverage the ever-growing data, information, and services that are available on the Internet. Helpful examples demonstrate how to use the semantic Web to solve practical, real-world problems while you take a look at the set of design principles, collaborative working groups, and technologies that form the semantic Web. The companion Web site features full code, as well as a reference section, a FAQ section, a discussion forum, and a semantic blog.
| Author | : Bernard P. Zeigler |
| Publisher | : Elsevier |
| Total Pages | : 448 |
| Release | : 2007-08-07 |
| Genre | : Mathematics |
| ISBN | : 0080550541 |
Download Modeling and Simulation-Based Data Engineering Book in PDF, ePub and Kindle
Data Engineering has become a necessary and critical activity for business, engineering, and scientific organizations as the move to service oriented architecture and web services moves into full swing. Notably, the US Department of Defense is mandating that all of its agencies and contractors assume a defining presence on the Net-centric Global Information Grid. This book provides the first practical approach to data engineering and modeling, which supports interoperabililty with consumers of the data in a service- oriented architectures (SOAs). Although XML (eXtensible Modeling Language) is the lingua franca for such interoperability, it is not sufficient on its own. The approach in this book addresses critical objectives such as creating a single representation for multiple applications, designing models capable of supporting dynamic processes, and harmonizing legacy data models for web-based co-existence. The approach is based on the System Entity Structure (SES) which is a well-defined structure, methodology, and practical tool with all of the functionality of UML (Unified Modeling Language) and few of the drawbacks. The SES originated in the formal representation of hierarchical simulation models. So it provides an axiomatic formalism that enables automating the development of XML dtds and schemas, composition and decomposition of large data models, and analysis of commonality among structures. Zeigler and Hammond include a range of features to benefit their readers. Natural language, graphical and XML forms of SES specification are employed to allow mapping of legacy meta-data. Real world examples and case studies provide insight into data engineering and test evaluation in various application domains. Comparative information is provided on concepts of ontologies, modeling and simulation, introductory linguistic background, and support options enable programmers to work with advanced tools in the area. The website of the Arizona Center for Integrative Modeling and Simulation, co-founded by Zeigler in 2001, provides links to downloadable software to accompany the book. The only practical guide to integrating XML and web services in data engineering Introduces linguistic levels of interoperability for effective information exchange Covers the interoperability standards mandated by national and international agencies Complements Zeigler's classic THEORY OF MODELING AND SIMULATION
| Author | : Philipp Cimiano |
| Publisher | : Springer Science & Business Media |
| Total Pages | : 362 |
| Release | : 2006-12-11 |
| Genre | : Computers |
| ISBN | : 0387392521 |
Download Ontology Learning and Population from Text Book in PDF, ePub and Kindle
In the last decade, ontologies have received much attention within computer science and related disciplines, most often as the semantic web. Ontology Learning and Population from Text: Algorithms, Evaluation and Applications discusses ontologies for the semantic web, as well as knowledge management, information retrieval, text clustering and classification, as well as natural language processing. Ontology Learning and Population from Text: Algorithms, Evaluation and Applications is structured for research scientists and practitioners in industry. This book is also suitable for graduate-level students in computer science.
| Author | : C. Maria Keet |
| Publisher | : |
| Total Pages | : 344 |
| Release | : 2018-11-07 |
| Genre | : Computer software |
| ISBN | : 9781848902954 |
Download An Introduction to Ontology Engineering Book in PDF, ePub and Kindle
An Introduction to Ontology Engineering introduces the student to a comprehensive overview of ontology engineering, and offers hands-on experience that illustrate the theory. The topics covered include: logic foundations for ontologies with languages and automated reasoning, developing good ontologies with methods and methodologies, the top-down approach with foundational ontologies, and the bottomup approach to extract content from legacy material, and a selection of advanced topics that includes Ontology-Based Data Access, the interaction between ontologies and natural languages, and advanced modelling with fuzzy and temporal ontologies. Each chapter contains review questions and exercises, and descriptions of two group assignments are provided as well. The textbook is aimed at advanced undergraduate/postgraduate level in computer science and could fi t a semester course in ontology engineering or a 2-week intensive course. Domain experts and philosophers may fi nd a subset of the chapters of interest, or work through the chapters in a different order. Maria Keet is an Associate Professor with the Department of Computer Science, University of Cape Town, South Africa. She received her PhD in Computer Science in 2008 at the KRDB Research Centre, Free University of Bozen-Bolzano, Italy. Her research focus is on knowledge engineering with ontologies and Ontology, and their interaction with natural language and conceptual data modelling, which has resulted in over 100 peer-reviewed publications. She has developed and taught multiple courses on ontology engineering and related courses at various universities since 2009.
| Author | : Panos Alexopoulos |
| Publisher | : "O'Reilly Media, Inc." |
| Total Pages | : 330 |
| Release | : 2020-08-19 |
| Genre | : Computers |
| ISBN | : 1492054224 |
Download Semantic Modeling for Data Book in PDF, ePub and Kindle
What value does semantic data modeling offer? As an information architect or data science professional, let’s say you have an abundance of the right data and the technology to extract business gold—but you still fail. The reason? Bad data semantics. In this practical and comprehensive field guide, author Panos Alexopoulos takes you on an eye-opening journey through semantic data modeling as applied in the real world. You’ll learn how to master this craft to increase the usability and value of your data and applications. You’ll also explore the pitfalls to avoid and dilemmas to overcome for building high-quality and valuable semantic representations of data. Understand the fundamental concepts, phenomena, and processes related to semantic data modeling Examine the quirks and challenges of semantic data modeling and learn how to effectively leverage the available frameworks and tools Avoid mistakes and bad practices that can undermine your efforts to create good data models Learn about model development dilemmas, including representation, expressiveness and content, development, and governance Organize and execute semantic data initiatives in your organization, tackling technical, strategic, and organizational challenges
| Author | : Mayank Kejriwal |
| Publisher | : MIT Press |
| Total Pages | : 559 |
| Release | : 2021-03-30 |
| Genre | : Computers |
| ISBN | : 0262045095 |
Download Knowledge Graphs Book in PDF, ePub and Kindle
A rigorous and comprehensive textbook covering the major approaches to knowledge graphs, an active and interdisciplinary area within artificial intelligence. The field of knowledge graphs, which allows us to model, process, and derive insights from complex real-world data, has emerged as an active and interdisciplinary area of artificial intelligence over the last decade, drawing on such fields as natural language processing, data mining, and the semantic web. Current projects involve predicting cyberattacks, recommending products, and even gleaning insights from thousands of papers on COVID-19. This textbook offers rigorous and comprehensive coverage of the field. It focuses systematically on the major approaches, both those that have stood the test of time and the latest deep learning methods.
