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Novel Techniques for Metabolic Imaging Using Hyperpolarized Carbon-13 Compounds

Novel Techniques for Metabolic Imaging Using Hyperpolarized Carbon-13 Compounds
Author: Gajanana Keshava Datta
Publisher:
Total Pages:
Release: 2019
Genre:
ISBN:

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Magnetic resonance imaging (MRI) using hyperpolarized carbon-13 compounds is an emerging tool to image real-time in vivo cellular metabolism with applications in studying tumor metabolism, understanding cardiac energetics, probing metabolic diseases, and assessing therapeutic response. In this work, we present several advances of this technology. First, in an imaging study using hyperpolarized [1-13C] pyruvate to assess the metabolic response in rat C6 glioma model treated with an anti-Vascular Endothelial Growth Factor (anti-VEGF) drug, we measured the relative preponderance of in vivo glycolysis and oxidative phosphorylation. We show that a single time-point measurement of the 13C lactate to bicarbonate ratio, 48 hours post-treatment, predicts survival and introduce the concept of cancer metabolic therapy index as a potential biomarker to evaluate treatment efficacy. Asymmetry of the C2 doublet in a sample of [1,2-13C] pyruvate has been suggested as a measure of in vivo polarization, a parameter necessary for quantitative studies. In the second part of this thesis, using product operator formalism, we present a theory for the asymmetry arising from the longitudinal two-spin order in hyperpolarized [1,2-13C] pyruvate. A model utilizing Redfield theory and three different relaxation mechanisms is proposed to explain the experimentally observed time-evolution of the asymmetry parameter. We show that the dipolar relaxation mechanism is dominant during the initial evolution of asymmetry, whereas, the cross-relaxation terms, arising from the interaction of chemical shift anisotropy and dipolar coupling, drive the asymmetry beyond its thermal equilibrium value. We further demonstrate that the knowledge of initial polarization is necessary for the estimation of instantaneous polarization using an asymmetry metric. Metabolic imaging using [2-13C] pyruvate simultaneously provides a direct measure of glycolysis and real-time window into the Krebs cycle. However, the difficulties due to the spread of the metabolite NMR signals over a large spectral range and the low SNR of [2-13C] lactate have limited its use. Here, we propose a hybrid imaging sequence alternately employing a fully resolved spectroscopic imaging to image the mitochondrial metabolites and a lactate-selective imaging sequence to simultaneously acquire real-time in vivo information related to oxidative phosphorylation and glycolysis. Additionally, we introduce two new techniques for resolving the J-modulated artifact in the imaging of [2-13C] lactate, one based on the idea of quadrature imaging and the other using a narrowband excitation pulse. In the concluding part of this thesis, two polarization transfer techniques that enhance the sensitivity of lactate detection in a hyperpolarized metabolic imaging experiment are presented. By transferring the polarization from the C2 carbon in hyperpolarized [2-13C] lactate to its J-coupled proton, an ~3X SNR gain as compared to direct carbon detection is achieved. To solve the problem of the lactate doublet buried under large water and lipid signals, a time-series based water-suppression method is developed that delivers over 3 orders of reduction in water signal. A second technique, called GREEDI, uses gradient waveforms to split the coherences into two pathways such that an anti-phase and an in-phase component combine to give a singlet at the time of signal collection. This effective decoupling method with built-in water suppression, makes imaging of [2-13C] lactate possible without any ghosting artifacts, thus providing a tool to simultaneously assess in vivo oxidative phosphorylation and glycolysis using hyperpolarized [2-13C] pyruvate metabolic imaging.


Methodologies for Metabolomics

Methodologies for Metabolomics
Author: Norbert W. Lutz
Publisher: Cambridge University Press
Total Pages: 641
Release: 2013-01-21
Genre: Medical
ISBN: 0521765900

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Metabolomics, the global characterisation of the small molecule complement involved in metabolism, has evolved into a powerful suite of approaches for understanding the global physiological and pathological processes occurring in biological organisms. The diversity of metabolites, the wide range of metabolic pathways and their divergent biological contexts require a range of methodological strategies and techniques. Methodologies for Metabolomics provides a comprehensive description of the newest methodological approaches in metabolomic research. The most important technologies used to identify and quantify metabolites, including nuclear magnetic resonance and mass spectrometry, are highlighted. The integration of these techniques with classical biological methods is also addressed. Furthermore, the book presents statistical and chemometric methods for evaluation of the resultant data. The broad spectrum of topics includes a vast variety of organisms, samples and diseases, ranging from in vivo metabolomics in humans and animals to in vitro analysis of tissue samples, cultured cells and biofluids.


Imaging of Traumatic Brain Injury

Imaging of Traumatic Brain Injury
Author: Yoshimi Anzai
Publisher: Thieme
Total Pages: 519
Release: 2015-03-11
Genre: Medical
ISBN: 1604067292

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An image-rich text on neuroimaging of trauma patients Imaging of Traumatic Brain Injury is a radiological reference that covers all aspects of neurotrauma imaging and provides a clinical overview of traumatic brain injury (TBI). It describes the imaging features of acute head trauma, the pathophysiology of TBI, and the application of advanced imaging technology to brain-injured patients. Key Features: Covers acute as well as chronic traumatic brain injury Written in an easily accessible format, with pearls and summary boxes at the end of each chapter Includes state-of-the-art imaging techniques, including the multiplanar format, the utility of multiplanar reformats, perfusion imaging, susceptibility weighted imaging, and advanced MRI techniques Contains over 250 high-quality images This book will serve as a practical reference for practicing radiologists as well as radiology residents and fellows, neurosurgeons, trauma surgeons, and emergency physicians.


The Chemistry of Hyperpolarized Magnetic Resonance Probes

The Chemistry of Hyperpolarized Magnetic Resonance Probes
Author: Eul Hyun Suh
Publisher: Elsevier
Total Pages: 264
Release: 2024-05-31
Genre: Science
ISBN: 0323918425

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The Chemistry of Hyperpolarized Magnetic Resonance Probes, Volume Seven focuses on the chemical aspects of hyperpolarized NMR/MRI technology, with synthesis and characterizations of labeled compounds discussed from a practical point-of-view. A brief overview of the various hyperpolarization techniques are given, with the optimization of hyperpolarization conditions and the determination of critical parameters such as polarization level and T1 relaxation values described. A practical guide on the in vivo applications of hyperpolarized compounds in small animals is also included. Helps readers understand the structural features that determine the properties of HP-probes, such as chemical shift and relaxation times Aids readers in selecting stable isotope labeled probes for hyperpolarized NMR/MRI applications Teachers readers how to use the most appropriate synthetic methodology for the labeled probes Covers how to find the most suitable polarization technique (DNP, PHIP etc.) for the probe


The Heterogeneity of Cancer Metabolism

The Heterogeneity of Cancer Metabolism
Author: Anne Le
Publisher: Springer
Total Pages: 186
Release: 2018-06-26
Genre: Medical
ISBN: 331977736X

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Genetic alterations in cancer, in addition to being the fundamental drivers of tumorigenesis, can give rise to a variety of metabolic adaptations that allow cancer cells to survive and proliferate in diverse tumor microenvironments. This metabolic flexibility is different from normal cellular metabolic processes and leads to heterogeneity in cancer metabolism within the same cancer type or even within the same tumor. In this book, we delve into the complexity and diversity of cancer metabolism, and highlight how understanding the heterogeneity of cancer metabolism is fundamental to the development of effective metabolism-based therapeutic strategies. Deciphering how cancer cells utilize various nutrient resources will enable clinicians and researchers to pair specific chemotherapeutic agents with patients who are most likely to respond with positive outcomes, allowing for more cost-effective and personalized cancer therapeutic strategies.


Visualizing Chemistry

Visualizing Chemistry
Author: National Research Council
Publisher: National Academies Press
Total Pages: 222
Release: 2006-06-01
Genre: Science
ISBN: 030916463X

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Scientists and engineers have long relied on the power of imaging techniques to help see objects invisible to the naked eye, and thus, to advance scientific knowledge. These experts are constantly pushing the limits of technology in pursuit of chemical imagingâ€"the ability to visualize molecular structures and chemical composition in time and space as actual events unfoldâ€"from the smallest dimension of a biological system to the widest expanse of a distant galaxy. Chemical imaging has a variety of applications for almost every facet of our daily lives, ranging from medical diagnosis and treatment to the study and design of material properties in new products. In addition to highlighting advances in chemical imaging that could have the greatest impact on critical problems in science and technology, Visualizing Chemistry reviews the current state of chemical imaging technology, identifies promising future developments and their applications, and suggests a research and educational agenda to enable breakthrough improvements.


Glioma Imaging

Glioma Imaging
Author: Whitney B. Pope
Publisher: Springer Nature
Total Pages: 286
Release: 2019-11-11
Genre: Medical
ISBN: 3030273598

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This book covers physiologic, metabolic and molecular imaging for gliomas. Gliomas are the most common primary brain tumors. Imaging is critical for glioma management because of its ability to noninvasively define the anatomic location and extent of disease. While conventional MRI is used to guide current treatments, multiple studies suggest molecular features of gliomas may be identified with noninvasive imaging, including physiologic MRI and amino acid positron emission tomography (PET). These advanced imaging techniques have the promise to help elucidate underlying tumor biology and provide important information that could be integrated into routine clinical practice. The text outlines current clinical practice including common scenarios in which imaging interpretation impacts patient management. Gaps in knowledge and potential areas of advancement based on the application of more experimental imaging techniques will be discussed. In reviewing this book, readers will learn: current standard imaging methodologies used in clinical practice for patients undergoing treatment for glioma and the implications of emerging treatment modalities including immunotherapy the theoretical basis for advanced imaging techniques including diffusion and perfusion MRI, MR spectroscopy, CEST and amino acid PET the relationship between imaging and molecular/genomic glioma features incorporated in the WHO 2016 classification update and the potential application of machine learning about the recently adopted and FDA approved standard brain tumor protocol for multicenter drug trials of the gaps in knowledge that impede optimal patient management and the cutting edge imaging techniques that could address these deficits


Quantitative Magnetic Resonance Imaging

Quantitative Magnetic Resonance Imaging
Author: Nicole Seiberlich
Publisher: Academic Press
Total Pages: 1094
Release: 2020-11-18
Genre: Computers
ISBN: 0128170581

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Quantitative Magnetic Resonance Imaging is a ‘go-to’ reference for methods and applications of quantitative magnetic resonance imaging, with specific sections on Relaxometry, Perfusion, and Diffusion. Each section will start with an explanation of the basic techniques for mapping the tissue property in question, including a description of the challenges that arise when using these basic approaches. For properties which can be measured in multiple ways, each of these basic methods will be described in separate chapters. Following the basics, a chapter in each section presents more advanced and recently proposed techniques for quantitative tissue property mapping, with a concluding chapter on clinical applications. The reader will learn: The basic physics behind tissue property mapping How to implement basic pulse sequences for the quantitative measurement of tissue properties The strengths and limitations to the basic and more rapid methods for mapping the magnetic relaxation properties T1, T2, and T2* The pros and cons for different approaches to mapping perfusion The methods of Diffusion-weighted imaging and how this approach can be used to generate diffusion tensor maps and more complex representations of diffusion How flow, magneto-electric tissue property, fat fraction, exchange, elastography, and temperature mapping are performed How fast imaging approaches including parallel imaging, compressed sensing, and Magnetic Resonance Fingerprinting can be used to accelerate or improve tissue property mapping schemes How tissue property mapping is used clinically in different organs Structured to cater for MRI researchers and graduate students with a wide variety of backgrounds Explains basic methods for quantitatively measuring tissue properties with MRI - including T1, T2, perfusion, diffusion, fat and iron fraction, elastography, flow, susceptibility - enabling the implementation of pulse sequences to perform measurements Shows the limitations of the techniques and explains the challenges to the clinical adoption of these traditional methods, presenting the latest research in rapid quantitative imaging which has the possibility to tackle these challenges Each section contains a chapter explaining the basics of novel ideas for quantitative mapping, such as compressed sensing and Magnetic Resonance Fingerprinting-based approaches


In Vivo NMR Spectroscopy

In Vivo NMR Spectroscopy
Author: Robin A. de Graaf
Publisher: John Wiley & Sons
Total Pages: 584
Release: 2019-03-11
Genre: Science
ISBN: 1119382548

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Presents basic concepts, experimental methodology and data acquisition, and processing standards of in vivo NMR spectroscopy This book covers, in detail, the technical and biophysical aspects of in vivo NMR techniques and includes novel developments in the field such as hyperpolarized NMR, dynamic 13C NMR, automated shimming, and parallel acquisitions. Most of the techniques are described from an educational point of view, yet it still retains the practical aspects appreciated by experimental NMR spectroscopists. In addition, each chapter concludes with a number of exercises designed to review, and often extend, the presented NMR principles and techniques. The third edition of In Vivo NMR Spectroscopy: Principles and Techniques has been updated to include experimental detail on the developing area of hyperpolarization; a description of the semi-LASER sequence, which is now a method of choice; updated chemical shift data, including the addition of 31P data; a troubleshooting section on common problems related to shimming, water suppression, and quantification; recent developments in data acquisition and processing standards; and MatLab scripts on the accompanying website for helping readers calculate radiofrequency pulses. Provide an educational explanation and overview of in vivo NMR, while maintaining the practical aspects appreciated by experimental NMR spectroscopists Features more experimental methodology than the previous edition End-of-chapter exercises that help drive home the principles and techniques and offer a more in-depth exploration of quantitative MR equations Designed to be used in conjunction with a teaching course on the subject In Vivo NMR Spectroscopy: Principles and Techniques, 3rd Edition is aimed at all those involved in fundamental and/or diagnostic in vivo NMR, ranging from people working in dedicated in vivo NMR institutes, to radiologists in hospitals, researchers in high-resolution NMR and MRI, and in areas such as neurology, physiology, chemistry, and medical biology.


Dynamic Hyperpolarized Nuclear Magnetic Resonance

Dynamic Hyperpolarized Nuclear Magnetic Resonance
Author: Thomas Jue
Publisher: Springer Nature
Total Pages: 279
Release: 2021-05-21
Genre: Technology & Engineering
ISBN: 3030550435

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This is the first book in the series to focus on dynamic hyperpolarized nuclear magnetic resonance, a burgeoning topic in biophysics. The volume follows the format and style of the Handbook of Modern Biophysics series and expands on topics already discussed in previous volumes. It builds a theoretical and experimental framework for students and researchers who wish to investigate the biophysics and biomedical application of dynamic hyperpolarized NMR. All contributors are internationally recognized experts, lead the dynamic hyperpolarized NMR field, and have first-hand knowledge of the chapter material. The book covers the following topics: Hyperpolarization by dissolution Dynamic Nuclear Polarization Design considerations for implementing a hyperpolarizer Chemical Shift Imaging with Dynamic Hyperpolarized NMR Signal Sampling Strategies in Dynamic Hyperpolarized NMR Kinetic Modeling of Enzymatic Reactions in Analyzing Hyperpolarized NMR Data Using Hyperpolarized NMR to Understand Biochemistry from Cells to Humans Innovating Metabolic Biomarkers for Hyperpolarized NMR New Insights into Metabolic Regulation from Hyperpolarized 13C MRS/MRI Studies Novel Views on Heart Function from Dynamic Hyperpolarized NMR Insights on Lactate Metabolism in Skeletal Muscle based on 13C Dynamic Nuclear Polarization Studies About the Editors Dirk Mayer is Professor of Diagnostic Radiology and Nuclear Medicine at the University of Maryland and is the Director of Metabolic Imaging. He is a recognized expert on dynamic nuclear polarization (DNP) MRI-based imaging techniques and has optimized acquisition and reconstruction techniques, has constructed kinetic modeling for quantitative analysis, and has developing new probes. Thomas Jue is Professor of Biochemistry and Molecular Medicine at the University of California Davis. He is an internationally recognized expert in developing and applying magnetic resonance techniques to study animal as well as human physiology in vivo. He served as a Chair of the Biophysics Graduate Group Program at UC Davis, where he started to redesign a graduate curriculum that balances physical science/mathematics formalism and biomedical perspective in order to promote interest at the interface of physical science, engineering, mathematics, biology, and medicine. The Handbook of Modern Biophysics represents an aspect of that effort.