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Modelling the Response of Antarctic Marine Species to Environmental Changes. Methods, Applications and Limitations

Modelling the Response of Antarctic Marine Species to Environmental Changes. Methods, Applications and Limitations
Author: Charlène Guillaumot
Publisher:
Total Pages: 0
Release: 2021
Genre:
ISBN:

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Among tools that are used to fill knowledge gaps on natural systems, ecological modelling has been widely applied during the last two decades. Ecological models are simple representations of a complex reality. They allow to highlight environmental drivers of species ecological niche and better understand species responses to environmental changes. However, applying models to Southern Ocean benthic organisms raises several methodological challenges. Species presence datasets are often aggregated in time and space nearby research stations or along main sailing routes. Data are often limited in number to correctly describe species occupied space and physiology. Finally, environmental datasets are not precise enough to accurately represent the complexity of marine habitats. Can we thus generate performant and accurate models at the scale of the Southern Ocean ? What are the limits of such approaches ? How could we improve methods to build more relevant models ? In this PhD thesis, three different model categories have been studied and their performance evaluated. (1) Mechanistic physiological models (Dynamic Energy Budget models, DEB) simulate how the abiotic environment influences individual metabolism and represent the species fundamental niche. (2) Species distribution models (SDMs) predict species distribution probability by studying the relationship between species presences and the environment. They represent the species realised niche. (3) Dispersal lagrangian models predict the drift of propagules in water masses. Results show that physiological models can be developed for marine Southern Ocean species to simulate the metabolic variations in link with the environment and predict population dynamics. However, more data are necessary to highlight detailed physiological contrasts between populations and to accurately evaluate models. Results obtained for SDMs suggest that models generated at the scale of the Southern Ocean and future simulations are not relevant, given the lack of data available to characterise species occupied space, the lack of precision and accuracy of future climate scenarios and the impossibility to evaluate models. Moreover, model extrapolate on a large proportion of the projected area. Adding information on species physiological limits (observations, results from experiments, physiological model outputs) was shown to reduce extrapolation and to improve the capacity of models to estimate the species realised niche. Spatial aggregation of occurrence data, which influenced model predictions and evaluation was also succefully corrected. Finally, dispersal models showed an interesting potential to highlight the role of geographic barriers or conversely of spatial connectivity and also the link between species distribution, physiology and phylogeny history. This PhD thesis provides methodological advices, annoted codes and tutorials to help implement future modelling works applied to Southern Ocean marine species.


Antarctic Ecosystems

Antarctic Ecosystems
Author: Alex D. Rogers
Publisher: John Wiley & Sons
Total Pages: 585
Release: 2012-02-28
Genre: Science
ISBN: 1444347225

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Since its discovery Antarctica has held a deep fascination for biologists. Extreme environmental conditions, seasonality and isolation have lead to some of the most striking examples of natural selection and adaptation on Earth. Paradoxically, some of these adaptations may pose constraints on the ability of the Antarctic biota to respond to climate change. Parts of Antarctica are showing some of the largest changes in temperature and other environmental conditions in the world. In this volume, published in association with the Royal Society, leading polar scientists present a synthesis of the latest research on the biological systems in Antarctica, covering organisms from microbes to vertebrate higher predators. This book comes at a time when new technologies and approaches allow the implications of climate change and other direct human impacts on Antarctica to be viewed at a range of scales; across entire regions, whole ecosystems and down to the level of species and variation within their genomes. Chapters address both Antarctic terrestrial and marine ecosystems, and the scientific and management challenges of the future are explored.


The Ocean and Cryosphere in a Changing Climate

The Ocean and Cryosphere in a Changing Climate
Author: Intergovernmental Panel on Climate Change (IPCC)
Publisher: Cambridge University Press
Total Pages: 755
Release: 2022-04-30
Genre: Science
ISBN: 9781009157971

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The Intergovernmental Panel on Climate Change (IPCC) is the leading international body for assessing the science related to climate change. It provides policymakers with regular assessments of the scientific basis of human-induced climate change, its impacts and future risks, and options for adaptation and mitigation. This IPCC Special Report on the Ocean and Cryosphere in a Changing Climate is the most comprehensive and up-to-date assessment of the observed and projected changes to the ocean and cryosphere and their associated impacts and risks, with a focus on resilience, risk management response options, and adaptation measures, considering both their potential and limitations. It brings together knowledge on physical and biogeochemical changes, the interplay with ecosystem changes, and the implications for human communities. It serves policymakers, decision makers, stakeholders, and all interested parties with unbiased, up-to-date, policy-relevant information. This title is also available as Open Access on Cambridge Core.


A Molecular View on Adaptation on Local and Continental Scales in the Sub-Antarctic and Antarctic Bivalve Aequiyoldia

A Molecular View on Adaptation on Local and Continental Scales in the Sub-Antarctic and Antarctic Bivalve Aequiyoldia
Author: Mariano Martinez
Publisher:
Total Pages: 0
Release: 2021
Genre:
ISBN:

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Marine species and populations have three potential responses to climate change: shift their distribution, adapt to the new environmental conditions or go extinct. The persistence of species unable to shift their ranges in response to changing conditions will be determined by their standing phenotypic plasticity or their ability to develop evolutionary adaptive responses. Physiological comparisons of closely related species/populations on latitudinal gradients have proven to be very informative in determining their respective phenotypic plasticity and genetic adaptability. These macro-scale perspectives, however, overlook the role of small-scale environmental variation in the inter-individual physiological and genetic differences. In this thesis, I used the Southern Ocean protobranch bivalve Aequiyoldia cf. eightsii (Jay, 1839) from West Antarctic Peninsula (WAP) and southern South America (SSA) as a “model species” to study the genetic and phenotypic traits that support adaptation to current and future environmental change at small (i.e., local or population scale) and large -scale (i.e., continental or species scale). As recent evidence suggests the possibility of cryptic speciation between Aequiyoldia bivalves from WAP and SSA, Chapter 2 aims at analysing the genetic diversity between and within populations on both sides of the Drake Passage. In this Chapter I report several highly differentiated mitochondrial genomes (h1, h2, h3, h4) within A. cf. eightsii coexisting in Antarctic populations but also inside a subset of the individuals sampled (mitochondrial heteroplasmy). The mitochondrial differentiation pattern is mirrored in nuclear Single Nucleotide Polymorphisms (SNPs) only across the Drake Passage, whilst the equally strongly differentiated mitochondrial lineages in the Southern Ocean are part of the same distribution of SNPs. These results suggest that populations on both sides of the Drake are two reproductively isolated species, and refuted the previous suggestions of cryptic speciation in WAP A. cf. eightsii. Using SNPs from the entire nuclear and mitochondrial genomes for reference, I demonstrated that mitochondrial heteroplasmy unpredictably misleads classical molecular barcoding procedures using universal cytochrome c oxidase subunit I (COI) primers, producing wrong taxonomic inferences with high confidence. The small-scale approach (Chapter 3) involved the study of in situ gene expression patterns within an Aequiyoldia population in front of a melting glacier in the region of the WAP. This population exhibited strikingly different gene expression pattern under subtly different natural conditions. This pattern was influenced by at least three independent underlying causes: small scale habitat heterogeneity (down to a kilometre scale), and the composition of the mitochondrial and nuclear genomes. Interestingly, the expression of nuclear genes correlated strongly with the mitochondrial genotype, with the highest gene expression differences between homoplasmic and heteroplasmic organisms. This novel mechanism might serve to add another layer of flexibility to respond to the environment and turn out instrumental in the face of the ongoing rapid environmental change in Antarctic fjords. The large-scale approach (Chapter 4) involved an experimental inter-continental comparison of gene expression patterns in response to changes in thermal and oxygen regimes expected under a global warming scenario. In both populations (from WAP and SSA), the experimental temperature implied exposure scenarios simulating a crossing of the Drake Passage, and to an expected near future warming scenario at the WAP. The WAP bivalves showed a moderated physiological response to warming and a remarkable ability to cope with short-term exposure to hypoxia by switching to a metabolic rate depression strategy and activating the alternative oxidation pathway. In SSA, the high prevalence of apoptosis (cell-death)-related differentially expressed genes especially under combined higher temperatures and hypoxia indicated that the SSA Aequiyoldia are operating near their physiological limits already. While the effect of temperature per se may not represent the single most effective barrier to Antarctic colonization by South American bivalves, the current distribution patterns as well as their resilience to future conditions may be better understood by looking at the synergistic effects of temperature in conjunction with short term exposure to hypoxia. Overall, this thesis provides a molecular perspective on the adaptive capacity and cross- continental invasibility of two Aequiyoldia sibling species inhabiting WAP and SSA under a global change scenario.


Assessing the Antarctic Environment from a Climate Change Perspective

Assessing the Antarctic Environment from a Climate Change Perspective
Author: Neloy Khare
Publisher: Springer Nature
Total Pages: 373
Release: 2022-01-01
Genre: Science
ISBN: 3030870782

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The present book covers diversified contributions addressing the impact of climate change on the Antarctic environment. It covers the reconstruction of environmental changes using different proxies. The chapters focus on the glacial history, glacial geomorphology, sedimentology, and geochemistry of Antarctic region. Furthermore, the Cenozoic evolution of the Antarctic ice sheet is discussed along with a Scientometrics analysis of climate change research. The book serves as a useful reference for researchers who are fascinated by the polar region and environmental research.


Adaptation and Evolution in Marine Environments, Volume 1

Adaptation and Evolution in Marine Environments, Volume 1
Author: Guido di Prisco
Publisher: Springer Science & Business Media
Total Pages: 237
Release: 2012-02-29
Genre: Science
ISBN: 3642273521

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The poles undergo climate changes exceeding those in the rest of the world in terms of their speed and extent, and have a key role in modulating the climate of the Earth. Ecosystems adapted to polar environments are likely to become vulnerable to climate changes. Their responses allow us to analyse and foresee the impact of changes at lower latitudes. We need to increase our knowledge of the polar marine fauna of continental shelves, slopes and deep sea, as identifying the responses of species and communities is crucial to establishing efficient strategies against threats to biodiversity, using international and cross-disciplinary approaches. The IPY 2007-2009 was a scientific milestone. The outstanding contribution of Marine Biology is reflected in this volume and the next one on “Adaptation and Evolution in Marine Environments – The Impacts of Global Change on Biodiversity” from the series “From Pole to Pole”, making these volumes a unique and invaluable component of the scientific outcome of the IPY.


Stressors in the Marine Environment

Stressors in the Marine Environment
Author: Martin Solan
Publisher: Oxford University Press
Total Pages: 381
Release: 2016-03-10
Genre: Science
ISBN: 0191028886

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A multitude of direct and indirect human influences have significantly altered the environmental conditions, composition, and diversity of marine communities. However, understanding and predicting the combined impacts of single and multiple stressors is particularly challenging because observed ecological feedbacks are underpinned by a number of physiological and behavioural responses that reflect stressor type, severity, and timing. Furthermore, integration between the traditional domains of physiology and ecology tends to be fragmented and focused towards the effects of a specific stressor or set of circumstances. This novel volume summarises the latest research in the physiological and ecological responses of marine species to a comprehensive range of marine stressors, including chemical and noise pollution, ocean acidification, hypoxia, UV radiation, thermal and salinity stress before providing a perspective on future outcomes for some of the most pressing environmental issues facing society today. Stressors in the Marine Environment synthesises the combined expertise of a range of international researchers, providing a truly interdisciplinary and accessible summary of the field. It is essential reading for graduate students as well as professional researchers in environmental physiology, ecology, marine biology, conservation biology, and marine resource management. It will also be of particular relevance and use to the regulatory agencies and authorities tasked with managing the marine environment, including social scientists and environmental economists.


Models for an Ecosystem Approach to Fisheries

Models for an Ecosystem Approach to Fisheries
Author: Éva E. Plagányi
Publisher: Food & Agriculture Org.
Total Pages: 128
Release: 2007
Genre: Technology & Engineering
ISBN: 9789251057346

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This report reviews the methods available for examining ecosystem dynamics and assessing the impact of interactions between ecosystems and human activities, particularly fisheries, and their implications for marine fisheries management. It focuses on the currently available models representative of general types such as bionergetic models, predator-prey models and minimally realistic models; with short descriptions given of model parameters, assumptions and data requirements. It discusses the advantages, disadvantages and limitations of each of the approaches; and concludes with some recommendations for the future development of multi-species and ecosystem models.


The Antarctic Silverfish: a Keystone Species in a Changing Ecosystem

The Antarctic Silverfish: a Keystone Species in a Changing Ecosystem
Author: Marino Vacchi
Publisher: Springer
Total Pages: 321
Release: 2017-05-03
Genre: Science
ISBN: 3319558935

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This book encompasses the body of available scientific information on the notothenioid fish Pleuragramma antarctica commonly known as Antarctic silverfish. This plankton-feeder of the intermediate trophic level is the most abundant fish in the coastal regions of high Antarctica, and plays a pivotal ecological role as the main prey of top predators like seals, penguins, whales and Antarctic toothfish. Broad circum-polar distribution, a key role in the Antarctic shelf pelagic ecosystem, and adaptations makes understanding the species’ likely response to environmental change relevant to foresee the potential responses at the local ecosystem level. Additionally, a detailed understanding of the abundance and trophic interactions of such a dominant keystone species is a vital element of informing the development of marine spatial planning and marine protected areas in the Antarctic continental shelf region. Experts in the field provide here unique insights into the evolutionary adaptation, eco-physiology, trophic ecology, reproductive and population ecology of the Antarctic silverfish and provide new clues about its vulnerability in facing the challenges of the ongoing environmental changes.


Responses of Early-life Stages of Coastal Marine Invertebrates to Different Environmental Variables

Responses of Early-life Stages of Coastal Marine Invertebrates to Different Environmental Variables
Author: Noé Espinosa-Novo
Publisher:
Total Pages: 0
Release: 2023
Genre:
ISBN:

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Quantifying species responses to the effects of changing environmental conditions is critical for a better understanding of how climate change affects invasion, expansion, and contraction of marine coastal species. Climate change is leading to modifications in the marine coastal environment, to conditions not experienced before; climate change results in that marine organisms experience simultaneous changes in several environmental variables (=drivers: e.g. temperature, salinity, food). How simultaneous changes in multiple drivers are experienced depend on species-specific traits (e.g. physiological tolerance, developmental time); for instance, co-occurring native and non-native species may experience and respond to climate change in different ways. In addition, within species, responses to multiple drivers may vary across populations and environmental gradients. The general objective of this thesis was to quantify the effects of environmental drivers (temperature, salinity and food limitation) on performance of native and non-native species with focus on larval stages and using crabs as model systems. There were two main objectives, first to compare native and non-native species in the responses to multiple environmental drivers and to quantify larval responses to temperature across their distribution range. I focused on larvae because they play a critical role in population dynamics: larvae are important for the dispersion and connectivity of populations, and are more sensitive to changes in environmental conditions than adults. I used three ecologically relevant species of coastal areas of the North Sea and North Atlantic Ocean as models: Hemigrapsus sanguineus, Carcinus maenas and Hemigrapsus takanoi. C. maenas is native to Europe; Hemigrapsus spp. are both non-native species in the European coast, where they coexist with C. maenas as juveniles and adults in the benthos. I used factorial experiments rearing larvae from hatching to megalopae at different combinations of temperature and other environmental drivers (salinity, food limitation). Larval performance was quantified as survival, duration of development, and growth. The first series of result show that both non-native (Hemigrapsus spp) species had higher performance (high survival, shorter duration of development and high growth rates) than the native C. maenas at higher temperatures and at moderately low salinities (18 - 24 °C, 20 - 25 ‰). These results are comparable to another non-native species in Europe, the Chinese mitten crab Eriocheir sinensis. In H. sanguineus, larvae show moderate level of tolerance to limited access to food at high temperature, which contrasted to the low tolerance shown in native C. maenas. Experiments and modelling show that the nature of the multiple driver response depends strongly on the metric used to measure time, where my emphasis is on biological time (time to metamorphosis). The results from the populations comparisons showed species and gradient-specific responses. For H. takanoi, distributed over a salinity gradient (North Sea -Baltic Sea), larvae from the North Sea populations always showed higher survival and faster development compared with those from the Baltic Sea. The population near the limit of the distribution showed very low survival, suggesting that subsidies or complex ontogenetic migration patterns are needed for population persistence. Results did not show genetic differentiation among the studied populations in the mitochondrial cytochrome c oxidase subunit one gene (COI) suggesting that there is high connectivity among populations. For C. maenas distributed across a latitudinal gradient (South: Vigo, Spain; North: Bergen and Trondheim, Norway) and reared under different temperatures (range 6 to 27 °C in steps of 3 °C), there was little variation in survival and growth among populations. However, larvae from the Norwegian populations had a slightly shorter duration of development at low temperatures than those from Vigo, this response has an adaptive value in that it could sustain survival in scenarios of reduced temperature, by shortening the larval phase, when mortality rates are high. Besides, results from this experiment (as well as for the mentioned above) showed high intrapopulation variability in larval performance which has a potential to affect range expansion of the above-mentioned species. Variation in the responses of larval stages to the effects of different environmental drivers highlights the importance of using physiological descriptors to quantify the performance of marine invertebrates to changing environments. Larval responses vary in rates of survival but also in the duration of time to achieve metamorphosis, as well as the rate at which the organisms grow, with concomitant effects on post-metamorphic success, which in seasonal habitats may strongly depend on temperature. The results from the thesis highlight the importance of quantifying the responses of marine invertebrates to changing environmental conditions, considering different species and species distributed across different gradients as well as variations among and within species.