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Microtubule-based Regulation of Vesicular Transport

Microtubule-based Regulation of Vesicular Transport
Author: Linda Balabanian
Publisher:
Total Pages:
Release: 2021
Genre:
ISBN:

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"Motor proteins kinesins and dynein are mechanoenzymes that catalyze ATP hydrolysis to take successive steps on microtubule filaments, while transporting organelles to their destinations. How do motor proteins efficiently navigate specific microtubule tracks to sort cargoes? The microtubule cytoskeleton regulates the trafficking and sorting of vesicles through interactions with microtubule-associated proteins, tubulin post-translational modifications and network organization. The impairment of transport causes neurodegenerative disease. The interplay of the microtubule-based regulatory factors poses challenges in understanding the regulation of intracellular transport and contributes to apparent discrepancies between studies in live cells and reconstituted in vitro systems. In my thesis, we address such regulatory mechanisms that modulate the efficient transport of cargoes on the microtubule network. Acetylated microtubules, abundant in neuronal axons and central regions of fibroblasts, constitute the preferred tracks for kinesin-1 motors. However, microtubule acetylation does not influence kinesin-1 motility in purified systems, suggesting that regulatory factors other than this post-translational modification contribute to the motor's track selection. We isolated intact microtubule networks from fibroblasts to conduct motility assays of purified kinesin-1. With this approach bridging live cell studies and reconstituted systems, we demonstrate that although tubulin acetylation does not directly impact kinesin-1 binding or motility, it is highly correlated with microtubule bundling, which leads to longer kinesin-1 run lengths. We expect that the higher local density of microtubules within bundles allows for rapid kinesin-1 re-attachment upon unbinding, extending the total displacement. We also investigated the role of neuronal microtubule-associated protein tau, which normally bundles acetylated axonal microtubules. Several studies show that tau strongly inhibits kinesin-1 in vitro, although paradoxically kinesin-1 driven transport is highly efficient on tau-decorated microtubules in neurons. We found that inhibition of kinesin-1 by tau is not affected by either microtubule acetylation or bundling on the isolated microtubule networks. This led us to further investigate how motor proteins can navigate tau-associated microtubules in fibroblasts, which do not endogenously express tau. As tau phosphorylation modulates tau's diffusivity on microtubules, we investigated the effects of wild-type (WT) tau (non-phosphorylated) and phosphomimetic tau (at Y18) on the motility of different organelles. We found that phosphomimetic tau does not inhibit the motility of centrally positioned lysosomes, whereas WT tau reduces the processivity of peripheral and central lysosomes similarly, as shown by mean squared displacement and radius of gyration measurements of their trajectories. Early endosomes are more sensitive to inhibition by both WT and phosphomimetic tau. Our model suggests that tau phosphorylation does not inhibit lysosomes that are driven by kinesin-1 on acetylated microtubule bundles, in contrast to the inhibition of kinesin-3 mediated transport in the periphery"--


Molecular Biology of The Cell

Molecular Biology of The Cell
Author: Bruce Alberts
Publisher:
Total Pages: 0
Release: 2002
Genre: Cytology
ISBN: 9780815332183

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Regulation of Microtubule Organization and Microtubule-dependent Transport by Septin 9

Regulation of Microtubule Organization and Microtubule-dependent Transport by Septin 9
Author: Xiaobo Bai
Publisher:
Total Pages: 330
Release: 2015
Genre: Biological sciences
ISBN:

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Microtubules (MTs) are a major component of the mammalian cytoskeleton. MTs are essential for cell morphogenesis and cellular functions including cell motility, cell division and intra-cellular transport. MT functions are tightly regulated by post-translational modifications (PTMs) and MT-associated proteins (MAPs). However, the underlying mechanisms are still elusive. Septins are a family of GTP-binding proteins that can form hetero-oligomeric and polymeric structures, and function as scaffolds or diffusion barriers, controlling the localization of membrane and cytoplasmic proteins. Mammalian septins interact with MTs and actin filaments, Septins are also involved in Golgi-to-plasma membrane vesicle transport and chromosome alignment. Interestingly, septins have been shown to interact with the centromere-associated protein E (CENP-E), a mitotic kinesin-like motor that links kinetochores to the ends of spindle MTs. However, it is unknown whether septins interact directly with MTs and how they affect MT organization and intracellular transport. In the first part of this thesis, I studied how MT organization is regulated by septins. I showed that the N-terminal domain of SEPT9 contains the novel repeat motifs K/R-x-x-E/D and R/K-R-x-E, which bind and bundle MTs by interacting with the acidic C-terminal tails of [beta]-tubulin. Alanine scanning mutagenesis revealed that the K/R-R/x-x-E/D motifs pair electrostatically with one another and the C-terminal tails of Îø-tubulin, enabling septin-septin interactions that link MTs together. SEPT9 is the only gene linked to hereditary neuralgic amyotrophy (HNA), a rare autosomal-dominant neuropathy. SEPT9 isoforms lacking repeat motifs or containing the HNA-linked mutation R88W, which maps to the R/K-R-x-E motif, diminished intracellular MT bundling and impaired asymmetric neurite growth in PC-12 cells. These findings provide the first insight into the mechanism of septin interaction with MTs and the molecular and cellular basis of HNA. In the second part of this thesis, I discovered a novel interaction between SEPT9 and KIF17, a kinesin 2 family motor that is important for learning and memory, mediating the transport of the NMDA glutamate receptor in hippocampal neurons. I found that SEPT9 associates directly with the cargo-binding C-terminal tail of KIF17 and competes with mLin-10/Mint1, a cargo adaptor/scaffold protein, which links KIF17 to the NMDA receptor subunit 2B (NR2B). Significantly, SEPT9 down-regulates NR2B transport into the dendrites of hippocampal neurons. Because SEPT9 does not affect the microtubule-dependent motility of KIF17, my results suggest that SEPT9 modulates the interaction of KIF17 with NR2B cargo. These results provide the first evidence of an interaction between septins and a non-mitotic kinesin, and suggest that SEPT9 modulates specifically the interactions of KIF17 with membrane cargo. These findings advanced our knowledge of how septins associate with MTs and revealed the mechanism of MT binding and bundling by septins. My studies also provided the first clue about the etiology of HNA, which might be helpful in developing therapies for this disease in the future. In addition, the results of this work provided the first insight into how septins may regulate kinesin-dependent transport and the transport of a neurotransmitter to dendrite membrane. This knowledge could potentially be helpful in developing treatment for diseases associated with misregulation of MT organization and MT based transport.


Microtubules, in vitro

Microtubules, in vitro
Author: John J. Correia
Publisher: Academic Press
Total Pages: 472
Release: 2013-08-20
Genre: Science
ISBN: 0124078885

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There continues to be intense interest in the microtubule cytoskeleton; the assembly, structure and regulation of microtubules; and the numerous motors and accessory proteins that control cell cycle, dynamics, organization and transport. The field continues to grow and explore new aspects of these issues driven immensely by developments in optical imaging and tracking techniques. This Second Edition brings together current research and protocols in the field of microtubules in vitro and will serve as a valuable tool for cell biologists, biophysicists and pharmacologists who study the microtubule cytoskeleton, as well as for researchers in the biomedical and biotechnology communities with interest in developing drugs that target microtubules, MAPS and motors. Chapters reflect experimental procedures and new developments in the field of microtubule in vitro research Combines classical approaches and modern technologies Presents easy-to-use protocols and thorough background information, compiled by leaders in the field


The Cytoskeleton

The Cytoskeleton
Author: James Spudich
Publisher:
Total Pages: 0
Release: 1996
Genre: Actin
ISBN: 9780824331733

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Culturing Nerve Cells

Culturing Nerve Cells
Author: Gary Banker
Publisher: MIT Press
Total Pages: 706
Release: 1998
Genre: Anatomy
ISBN: 9780262024389

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A do-it-yourself manual for culturing nerve cells, complete with recipes and protocols.


Primary Cilia

Primary Cilia
Author:
Publisher: Academic Press
Total Pages: 423
Release: 2009-11-30
Genre: Science
ISBN: 0080962823

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In recent years, the role of cilia in the study of health, development and disease has been increasingly clear, and new discoveries have made this an exciting and important field of research. This comprehensive volume, a complement to the new three-volume treatment of cilia and flagella by King and Pazour, presents easy-to-follow protocols and detailed background information for researchers working with cilia and flagella. Covers protocols for primary cilia across several systems and species Both classic and state-of-the-art methods readily adaptable across model systems, and designed to last the test of time Relevant to clinicians and scientists working in a wide range of fields