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Marine Microbial Diversity as a Source of Bioactive Natural Products

Marine Microbial Diversity as a Source of Bioactive Natural Products
Author: Didier Stien
Publisher: MDPI
Total Pages: 146
Release: 2020-06-17
Genre: Science
ISBN: 3039361821

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A trillion different microbial species have been evolving for some 3.5 billion years, producing ever more complex active secondary metabolites. The sea is a cauldron of a great diversity of useful and valuable compounds. This Special Issue focused on studies of marine microbe natural products for discovering compounds useful to humankind. Papers were collected that provide up-to-date information regarding the characterization of marine microbes’ metabolic diversity and the evaluation of the therapeutic potential of marine microbes’ metabolites. Most of the articles in this book deal with marine fungi, biological and chemical diversity, and their active metabolites. This may be a sign that marine fungi have been under studied to date and are perceived by many researchers as an important source of discovery in this field. A best practices guide for the isolation of marine fungi from different matrixes and their conservation is also presented. The comparison of the phylogenetic and metabolomic profiles of microalgae from different lineages provides novel insights into the potential of chemotaxonomy in marine phytoplankton, showing a good overlap of phylogenetic and chemotaxonomic signals.


The Marine Microbiome

The Marine Microbiome
Author: Lucas J. Stal
Publisher: Springer
Total Pages: 501
Release: 2016-06-03
Genre: Science
ISBN: 3319330004

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This book describes the state-of-the-art concerning the ‘marine microbiome’ and its uses in biotechnology. The first part discusses the diversity and ecology of marine microorganisms and viruses, including all three domains of life: Bacteria, Archaea, and Eukarya. It discusses whether marine microorganisms exist and, if so, why they might be unique. The second part presents selected marine habitats, their inhabitants and how they influence biogeochemical cycles, while the third discusses the utilization of marine microbial resources, including legal aspects, dissemination, and public awareness. The marine microbiome is the total of microorganisms and viruses in the ocean and seas and in any connected environment, including the seafloor and marine animals and plants. The diversity of microbial life remains unquantified and largely unknown, and could represent a hidden treasure for human society. Accordingly, this book is also intended to connect academics and industry, providing essential information for microbiologists from both fields.


Microbial Responses to Environmental Changes

Microbial Responses to Environmental Changes
Author: Jürg B. Logue
Publisher: Frontiers Media SA
Total Pages: 263
Release: 2016-01-20
Genre: Microbiology
ISBN: 2889197239

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Advances in next generation sequencing technologies, omics, and bioinformatics are revealing a tremendous and unsuspected diversity of microbes, both at a compositional and functional level. Moreover, the expansion of ecological concepts into microbial ecology has greatly advanced our comprehension of the role microbes play in the functioning of ecosystems across a wide range of biomes. Super-imposed on this new information about microbes, their functions and how they are organized, environmental gradients are changing rapidly, largely driven by direct and indirect human activities. In the context of global change, understanding the mechanisms that shape microbial communities is pivotal to predict microbial responses to novel selective forces and their implications at the local as well as global scale. One of the main features of microbial communities is their ability to react to changes in the environment. Thus, many studies have reported changes in the performance and composition of communities along environmental gradients. However, the mechanisms underlying these responses remain unclear. It is assumed that the response of microbes to changes in the environment is mediated by a complex combination of shifts in the physiological properties, single-cell activities, or composition of communities: it may occur by means of physiological adjustments of the taxa present in a community or selecting towards more tolerant/better adapted phylotypes. Knowing whether certain factors trigger one, many, or all mechanisms would greatly increase confidence in predictions of future microbial composition and processes. This Research Topic brings together studies that applied the latest molecular techniques for studying microbial composition and functioning and integrated ecological, biogeochemical and/or modeling approaches to provide a comprehensive and mechanistic perspective of the responses of micro-organisms to environmental changes. This Research Topic presents new findings on environmental parameters influencing microbial communities, the type and magnitude of response and differences in the response among microbial groups, and which collectively deepen our current understanding and knowledge of the underlying mechanisms of microbial structural and functional responses to environmental changes and gradients in both aquatic and terrestrial ecosystems. The body of work has, furthermore, identified many challenges and questions that yet remain to be addressed and new perspectives to follow up on.


Microbial Ecology of the Oceans

Microbial Ecology of the Oceans
Author: Josep M. Gasol
Publisher: John Wiley & Sons
Total Pages: 663
Release: 2018-01-31
Genre: Science
ISBN: 1119107202

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The newly revised and updated third edition of the bestselling book on microbial ecology in the oceans The third edition of Microbial Ecology of the Oceans features new topics, as well as different approaches to subjects dealt with in previous editions. The book starts out with a general introduction to the changes in the field, as well as looking at the prospects for the coming years. Chapters cover ecology, diversity, and function of microbes, and of microbial genes in the ocean. The biology and ecology of some model organisms, and how we can model the whole of the marine microbes, are dealt with, and some of the trophic roles that have changed in the last years are discussed. Finally, the role of microbes in the oceanic P cycle are presented. Microbial Ecology of the Oceans, Third Edition offers chapters on The Evolution of Microbial Ecology of the Ocean; Marine Microbial Diversity as Seen by High Throughput Sequencing; Ecological Significance of Microbial Trophic Mixing in the Oligotrophic Ocean; Metatranscritomics and Metaproteomics; Advances in Microbial Ecology from Model Marine Bacteria; Marine Microbes and Nonliving Organic Matter; Microbial Ecology and Biogeochemistry of Oxygen-Deficient Water Columns; The Ocean’s Microscale; Ecological Genomics of Marine Viruses; Microbial Physiological Ecology of The Marine Phosphorus Cycle; Phytoplankton Functional Types; and more. A new and updated edition of a key book in aquatic microbial ecology Includes widely used methodological approaches Fully describes the structure of the microbial ecosystem, discussing in particular the sources of carbon for microbial growth Offers theoretical interpretations of subtropical plankton biogeography Microbial Ecology of the Oceans is an ideal text for advanced undergraduates, beginning graduate students, and colleagues from other fields wishing to learn about microbes and the processes they mediate in marine systems.


Marine Microbiology

Marine Microbiology
Author: Colin B. Munn
Publisher: CRC Press
Total Pages: 606
Release: 2019-11-26
Genre: Science
ISBN: 0429590423

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The third edition of this bestselling text has been rigorously updated to reflect major new discoveries and concepts since 2011, especially progress due to extensive application of high-throughput sequencing, single cell genomics and analysis of large datasets. Significant advances in understanding the diversity and evolution of bacteria, archaea, fungi, protists, and viruses are discussed and their importance in marine processes is explored in detail. Now in full colour throughout, all chapters have been significantly expanded, with many new diagrams, illustrations and boxes to aid students’ interest and understanding. Novel pedagogy is designed to encourage students to explore current high-profile research topics. Examples include the impacts of rising CO2 levels on microbial community structure and ocean processes, interactions of microbes with plastic pollution, symbiotic interactions, and emerging diseases of marine life. This is the only textbook addressing such a broad range of topics in the specific area of marine microbiology, now a core topic within broader Marine Science degrees. A Companion Website provides additional online resources for instructors and students, including a summary of key concepts and terminology for each chapter, links to further resources, and flashcards to aid self-assessment.


Microbial Ecology of the Oceans

Microbial Ecology of the Oceans
Author: Josep M. Gasol
Publisher: John Wiley & Sons
Total Pages: 571
Release: 2018-03-27
Genre: Science
ISBN: 1119107180

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The newly revised and updated third edition of the bestselling book on microbial ecology in the oceans The third edition of Microbial Ecology of the Oceans features new topics, as well as different approaches to subjects dealt with in previous editions. The book starts out with a general introduction to the changes in the field, as well as looking at the prospects for the coming years. Chapters cover ecology, diversity, and function of microbes, and of microbial genes in the ocean. The biology and ecology of some model organisms, and how we can model the whole of the marine microbes, are dealt with, and some of the trophic roles that have changed in the last years are discussed. Finally, the role of microbes in the oceanic P cycle are presented. Microbial Ecology of the Oceans, Third Edition offers chapters on The Evolution of Microbial Ecology of the Ocean; Marine Microbial Diversity as Seen by High Throughput Sequencing; Ecological Significance of Microbial Trophic Mixing in the Oligotrophic Ocean; Metatranscritomics and Metaproteomics; Advances in Microbial Ecology from Model Marine Bacteria; Marine Microbes and Nonliving Organic Matter; Microbial Ecology and Biogeochemistry of Oxygen-Deficient Water Columns; The Ocean’s Microscale; Ecological Genomics of Marine Viruses; Microbial Physiological Ecology of The Marine Phosphorus Cycle; Phytoplankton Functional Types; and more. A new and updated edition of a key book in aquatic microbial ecology Includes widely used methodological approaches Fully describes the structure of the microbial ecosystem, discussing in particular the sources of carbon for microbial growth Offers theoretical interpretations of subtropical plankton biogeography Microbial Ecology of the Oceans is an ideal text for advanced undergraduates, beginning graduate students, and colleagues from other fields wishing to learn about microbes and the processes they mediate in marine systems.


Microbial Diversity and Ecology in Hotspots

Microbial Diversity and Ecology in Hotspots
Author: Aparna Gunjal
Publisher: Academic Press
Total Pages: 394
Release: 2021-11-26
Genre: Science
ISBN: 0323901492

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Microbial Diversity in Hotspots provides an introduction to microbial diversity and microbes in different hotspots and threatened areas. The book gives insights on extremophiles, phyllosphere and rhizosphere, covers fungal diversity, conservation and microbial association, focuses on biodiversity acts and policies, and includes cases studies. Microbes explored are from the coldest to the hottest areas of the world. Although hotspots are zones with extremely high microbiology activities, the knowledge of microbial diversity from these areas is very limited, hence this is a welcome addition to existing resources. Provides an introduction to microbial biotechnology Addresses novel approaches to the study of microbial diversity in hotspots Provides the basics, along with advanced information on microbial diversity Discusses the techniques used to examine microbial diversity with their applications and respective pros and cons for sustainability Explores the importance of microbial genomes studies in commercial applications


Biodiversity of Marine Microbes

Biodiversity of Marine Microbes
Author: Savvas Genitsaris
Publisher: MDPI
Total Pages: 104
Release: 2021-08-31
Genre: Science
ISBN: 3036510524

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The book entitled “Biodiversity of Marine Microbes” aims at highlighting the significance of marine microbes as primary producers, their contribution in complex ecological processes and their roles in biogeochemical cycles and ecosystem functioning. The book includes five research papers covering the diversity and composition of marine microbial communities representing all three domains of life in various marine environments, including coastal eutrophic areas, ice waters, and lagoons. One paper examines the diversity and succession of bacterial and archaeal communities from coastal waters in mesocosm experiments. The combination of classical tools with novel technological advances implemented in the methods of the papers offered an opportunity to answer fundamental questions and shed light on the complex and diverse life of marine microbes.


Marine Microbial Diversity

Marine Microbial Diversity
Author: Jennie C. Hunter-Cevera
Publisher:
Total Pages: 22
Release: 2005
Genre:
ISBN:

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Marine microbes are uniquely important to life as we know it. Since life most likely began in the oceans, marine microorganisms are the closest living descendants of the original forms of life. They are also major pillars of the biosphere. Their unique metabolisms allow marine microbes to carry out many steps of the biogeochemical cycles that other organisms are unable to complete. The smooth functioning of these cycles is necessary for life to continue on earth. Early marine microorganisms also helped create the conditions under which subsequent life developed. More than two billion years ago, the generation of oxygen by photosynthetic marine microorganisms helped shape the chemical environment in which plants, animals, and all other life forms have evolved. A great deal of research on the biogeography of marine microorganisms has been carried out, but many unknowns persist, and more work is needed to elucidate and understand their complexity. It is now known that microorganisms live in every corner of the oceans. Their habitats are diverse and include open water, sediment, bodies of marine macro- and microorganisms, estuaries, and hydrothermal vents. By studying these habitats, scientists have developed a limited ability to predict the composition of marine microbial communities. It has also been found that some marine microbes have more cosmopolitan distributions than others. Recent work has found that most of the ecological principles that apply to larger organisms can also be applied to microorganisms, including marine microbes, but there are exceptions. Almost every ecophysiological parameter in the oceans is thought to have an impact on the diversity of microbial communities. Most of the direct interactions marine microorganisms have with larger organisms fall into one of two broad categories: symbiosis or pathogenesis. Beneficial microbial symbioses have enabled many invertebrate species to take advantage of habitats that would otherwise be unavailable to them. Invertebrates in these relationships may also enjoy the benefits of bioactive compounds microbes may produce to prevent bio-fouling or to ward off predators. Marine viruses are found in surprisingly high numbers in seawater, but it is likely that these populations are in equilibrium with their host populations. The metabolic diversity of marine microorganisms allows them to assume many roles in the biogeochemical cycles that other organisms cannot complete. Marine microbes are also able to adapt to the many extreme environments in the oceans. As humans continue to alter the environment, climate change will inevitably impact marine microbial communities and the biogeochemical cycles in which they participate, but the exact nature of these impacts cannot yet be predicted. Human health relies on a number of critical equilibria that marine microorganisms broker, including the balance between viruses and their hosts in the oceans, the balances that keep harmful algal blooms in check, the processes that control nutrient concentrations in marine waters, and others. The metabolic capabilities of marine microbes can be put to work in any number of biotechnology applications, including the manufacture of industrial products and energy production. Marine microbes are sources of novel bioactive compounds that may have application as pharmaceuticals. Potential applications for marine microorganisms in ameliorating environmental degradation also exist. Innovative approaches in research, education, and training are critical for moving the field of marine microbiology forward. Modern research in this field should embrace the new tools of genomics and metagenomics, but not to the exclusion of other methods of discovery. Education and training in marine microbiology needs to be multidisciplinary. Arrangements that expose graduate students and postdoctoral scientists to laboratories that do work outside the students' immediate fields of focus should be encouraged.


Microbial Diversity

Microbial Diversity
Author: Oladele Ogunseitan
Publisher: John Wiley & Sons
Total Pages: 312
Release: 2008-04-15
Genre: Science
ISBN: 1405144483

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This book offers the first comprehensive, in-depth treatment of microbial diversity for undergraduate and graduate students. Using a global approach, Microbial Diversity illustrates the impact of microorganisms on ecological and Earth system phenomena. Accompanied by a devoted website with resources for both instructors and students: www.blackwellpublishing.com/ogunseitan Uses key ecological and global phenomena to show the continuity of microbial contribution. Illustrates the importance of microbial diversity for the understanding of global physiochemical and biological processes. Presents analyses of microscopic, culture, molecular, and phylogenetic systematic methods. Shows the relevance of microbial diversity to global environmental problems, such as climate change and ozone depletion. Features numerous illustrations, including over 60 4-color photographs of microbes.