Ligand Macromolecular Interactions In Drug Discovery PDF Download
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Author | : Ana Cecília A. Roque |
Publisher | : Methods in Molecular Biology |
Total Pages | : 316 |
Release | : 2010-03-23 |
Genre | : Medical |
ISBN | : |
Download Ligand-Macromolecular Interactions in Drug Discovery Book in PDF, ePub and Kindle
In this authoritative book, experts in the field highlight the main principles and methodologies currently utilized in the study of molecular interactions between compounds. This is as an ideal guide to those striving to further our knowledge of medicines.
Author | : Hans-Joachim Böhm |
Publisher | : John Wiley & Sons |
Total Pages | : 262 |
Release | : 2006-03-06 |
Genre | : Science |
ISBN | : 3527605517 |
Download Protein-Ligand Interactions Book in PDF, ePub and Kindle
The lock-and-key principle formulated by Emil Fischer as early as the end of the 19th century has still not lost any of its significance for the life sciences. The basic aspects of ligand-protein interaction may be summarized under the term 'molecular recognition' and concern the specificity as well as stability of ligand binding. Molecular recognition is thus a central topic in the development of active substances, since stability and specificity determine whether a substance can be used as a drug. Nowadays, computer-aided prediction and intelligent molecular design make a large contribution to the constant search for, e. g., improved enzyme inhibitors, and new concepts such as that of pharmacophores are being developed. An up-to-date presentation of an eternally young topic, this book is an indispensable information source for chemists, biochemists and pharmacologists dealing with the binding of ligands to proteins.
Author | : Prasenjit Mukherjee |
Publisher | : |
Total Pages | : 526 |
Release | : 2008 |
Genre | : |
ISBN | : |
Download Use of Molecular Modeling Tools in the Elucidation of Ligand-macromolecular Interactions and Applications in Structure-based Drug Design Book in PDF, ePub and Kindle
Abstract: A wide array of molecular modeling tools was utilized to understand the underlying principles of ligand-macromolecular interactions and utilize them for drug discovery and design applications. A structure based virtual screening methodology was elucidated to target the viral cysteine protease SARS-3CL pro and identify "micromolar" hits for potential development of antiviral therapy. The initial hits were utilized in a similarity/substructure search to identify biologically active analogues which further helped in understanding the SAR of these series. A synthetic strategy was developed for generating structural analogues of one of the identified hits. On a broader perspective, the irreversible inactivation mechanism of cysteine proteases was explored through a novel quantum mechanics/molecular mechanics study on the inhibition of the cysteine protease cruzain by vinyl sulfone based Michael acceptors. Strategies for small molecule based inhibition of protein-protein interaction interfaces was studied using cross-docking based virtual screening against the Bcl-xL protein. Biological assay validation and compound evaluation was carried out to identify micromolar hits. Docking pose based pharmacophore models were developed to predict the concomitant binding of Bcl-xL inhibitors to the Drug site 2 of HSA. Ligand-refined homology model development, simulation and docking validation studies were performed for structure-based drug design initiatives against the L.major and L.donovani FPPS enzyme. Comparative protein structure analysis of parasitic FPPS enzymes were carried out to understand the differences in their protein structural topology.
Author | : Robert M. Stroud |
Publisher | : Royal Society of Chemistry |
Total Pages | : 171 |
Release | : 2008 |
Genre | : Medical |
ISBN | : 0854043659 |
Download Computational and Structural Approaches to Drug Discovery Book in PDF, ePub and Kindle
This insightful book represents the experience and understanding of the global experts in the field and spotlights both the structural and medicinal chemistry aspects of drug design. The need to 'encode' the physiological factors of pharmacology, a key area, is explored.
Author | : Robert E. Handschumacher |
Publisher | : Pergamon |
Total Pages | : 192 |
Release | : 1990 |
Genre | : Medical |
ISBN | : |
Download NMR Methods for Elucidating Macromolecule-ligand Interactions Book in PDF, ePub and Kindle
The 4th Symposium was held in New Haven, Conn., July 1989. The four sessions cover current NMR structural methodology and its application; analysis of bioactive peptide conformation; macromolecular target recognition; and drug-macromolecular interactions. No index. Annotation copyright Book News, In
Author | : Holger Gohlke |
Publisher | : John Wiley & Sons |
Total Pages | : 359 |
Release | : 2012-04-06 |
Genre | : Medical |
ISBN | : 3527645977 |
Download Protein-Ligand Interactions Book in PDF, ePub and Kindle
Innovative and forward-looking, this volume focuses on recent achievements in this rapidly progressing field and looks at future potential for development. The first part provides a basic understanding of the factors governing protein-ligand interactions, followed by a comparison of key experimental methods (calorimetry, surface plasmon resonance, NMR) used in generating interaction data. The second half of the book is devoted to insilico methods of modeling and predicting molecular recognition and binding, ranging from first principles-based to approximate ones. Here, as elsewhere in the book, emphasis is placed on novel approaches and recent improvements to established methods. The final part looks at unresolved challenges, and the strategies to address them. With the content relevant for all drug classes and therapeutic fields, this is an inspiring and often-consulted guide to the complexity of protein-ligand interaction modeling and analysis for both novices and experts.
Author | : Flavio Ballante |
Publisher | : Humana |
Total Pages | : 327 |
Release | : 2022-04-07 |
Genre | : Medical |
ISBN | : 9781071612118 |
Download Protein-Ligand Interactions and Drug Design Book in PDF, ePub and Kindle
This detailed book collects modern and established computer-based methods aimed at addressing the drug discovery challenge from disparate perspectives by exploiting information on ligand-protein recognition. Beginning with methods that allow for the exploration of specific areas of chemical space and the designing of virtual libraries, the volume continues with sections on methods based on docking, quantitative models, and molecular dynamics simulations, which are employed for ligand discovery or development, as well as methods exploiting an ensemble of protein structures for the identification of potential protein targets. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Protein-Ligand Interactions and Drug Design provides detailed practical procedures of solid computer-aided drug design methodologies employed to rationalize and optimize protein-ligand interactions, for experienced researchers and novices alike.
Author | : R. E. Hubbard |
Publisher | : |
Total Pages | : 288 |
Release | : 2006 |
Genre | : Medical |
ISBN | : |
Download Structure-based Drug Discovery Book in PDF, ePub and Kindle
After an introductory overview of the principles and applications of structure-based methods in drug discovery, the essential features of the various methods are explored. Chapters on X-ray crystallography, NMR spectroscopy, computational chemistry and molecular modelling describe how these particular techniques have been enhanced to support rational drug discovery, with discussions on developments such as high-throughput structure determination, probing protein-ligand interactions by NMR spectroscopy, virtual screening, ad fragment-based drug discovery. The concluding chapters complement the overview of methods by presenting case histories which demonstrate the major impact that structure-based methods have had on the drug discovery process.
Author | : Robert Stroud |
Publisher | : |
Total Pages | : |
Release | : 2007 |
Genre | : |
ISBN | : |
Download Computational and Structural Approaches to Drug Discovery Book in PDF, ePub and Kindle
Author | : Adriano D. Andricopulo |
Publisher | : Frontiers Media SA |
Total Pages | : 415 |
Release | : 2019-02-05 |
Genre | : |
ISBN | : 2889457443 |
Download Chemoinformatics Approaches to Structure- and Ligand-Based Drug Design Book in PDF, ePub and Kindle
Chemoinformatics is paramount to current drug discovery. Structure- and ligand-based drug design strategies have been used to uncover hidden patterns in large amounts of data, and to disclose the molecular aspects underlying ligand-receptor interactions. This Research Topic aims to share with a broad audience the most recent trends in the use of chemoinformatics in drug design. To that end, experts in all areas of drug discovery have made their knowledge available through a series of articles that report state-of-the-art approaches. Readers are provided with outstanding contributions focusing on a wide variety of topics which will be of great value to those interested in the many different and exciting facets of drug design.