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Innate Antiviral Immunity

Innate Antiviral Immunity
Author: Karen Mossman
Publisher: Humana
Total Pages: 0
Release: 2018-08-03
Genre: Medical
ISBN: 9781493984268

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This book explores methods to study the complex and evolving interplay between a virus and its host that range from model systems to the detection of chemical molecules. The collection starts with the application of humanized mice and zebrafish as model organisms to study virus-host interactions and induction of innate immune responses. Subsequent chapters outline diverse methods to detect small interfering RNAs, microRNAs, and virus-derived dsRNA from a variety of cells, tissues, and organisms, as well as to interrogating the cytosolic RNA and DNA sensing pathways, including using RNA PAMPs as molecular tools, purification of cGAMP from virus particles and infected cells, and mechanisms to visualize the subcellular localization and activation of the adaptor proteins MAVS and STING. Cutting-edge methods, including high-throughput and genome-wide CRISPR/Cas9 screens, chromosome conformation capture, and whole-exome sequencing, are described to identify novel mediators, pathways, and variants underlying host susceptibility. Given the importance of studying these pathways and players under physiologic conditions, methods describing the isolation of primary mouse sensory neurons and group 2 innate lymphoid cells are also provided. Finally, this collection comes full circle back to the whole organism level and concludes with epidemiological methods to investigate virus-host interactions and the induction of innate immunity. Written for the Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Innate Antiviral Immunity: Methods and Protocols spans a diverse array of approaches to study and elucidate the intricacies of this vital area of study. The chapter 'Morphological Separation of Clustered Nuclei in Histological Images' is published open access under a CC BY 4.0 license at link.springer.com.


Encyclopedia of Virology

Encyclopedia of Virology
Author:
Publisher: Academic Press
Total Pages: 4109
Release: 2021-02-24
Genre: Science
ISBN: 0128145161

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Encyclopedia of Virology, Fourth Edition, Five Volume Set builds on the solid foundation laid by the previous editions, expanding its reach with new and timely topics. In five volumes, the work provides comprehensive coverage of the whole virosphere, making this a unique resource. Content explores viruses present in the environment and the pathogenic viruses of humans, animals, plants and microorganisms. Key areas and concepts concerning virus classification, structure, epidemiology, pathogenesis, diagnosis, treatment and prevention are discussed, guiding the reader through chapters that are presented at an accessible level, and include further readings for those needing more specific information. More than ever now, with the Covid19 pandemic, we are seeing the huge impact viruses have on our life and society. This encyclopedia is a must-have resource for scientists and practitioners, and a great source of information for the wider public. Offers students and researchers a one-stop shop for information on virology not easily available elsewhere Fills a critical gap of information in a field that has seen significant progress in recent years Authored and edited by recognized experts in the field, with a range of different expertise, thus ensuring a high-quality standard


Molecular Biology of The Cell

Molecular Biology of The Cell
Author: Bruce Alberts
Publisher:
Total Pages: 0
Release: 2002
Genre: Cytology
ISBN: 9780815332183

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Nucleic Acid Sensors and Antiviral Immunity

Nucleic Acid Sensors and Antiviral Immunity
Author: Dr. Prakash Sambhara
Publisher: CRC Press
Total Pages: 284
Release: 2012-11-26
Genre: Science
ISBN: 1498713653

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The discovery of Toll-like receptors (TLRs) in the late 1990s ushered in a new age of discovery for innate immunity. The importance of TLRs for immunology and biomedical research was recognized with the Nobel Prize for Medicine or Physiology in 2011. The prize was shared by three scientists: Ralph Steinman (for the discovery of dendritic cells, whi


Community Series in Antiviral Innate Immune Sensing, Regulation, and Viral Immune Evasion, volume II

Community Series in Antiviral Innate Immune Sensing, Regulation, and Viral Immune Evasion, volume II
Author: Chenhe Su
Publisher: Frontiers Media SA
Total Pages: 203
Release: 2024-01-18
Genre: Medical
ISBN: 2832541402

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This Research Topic is the second volume of the “Community Series in Antiviral Innate Immune Sensing, Regulation, and Viral Immune Evasion”. Please see the first volume here. The innate immune system is crucial to defend against viruses or other pathogenic microbes in the early phases of infection. The response starts with detecting evolutionarily conserved structures, termed pathogen-associated molecular patterns (PAMPs), by a set of germline-encoded pattern-recognition receptors (PRRs). Following the detection of specific viral PAMPs, PRRs trigger the activation of intracellular signaling cascades, ultimately leading to the induction of type I interferons (IFNs), pro-inflammatory cytokines, and antiviral genes through the activation of interferon regulatory factor 3 (IRF3) and IRF7. Antiviral pathways need to be tightly regulated to ensure successful antiviral defenses and avoid aberrant or dysregulation of host immune signaling. We believe that the Research Topic will give updated insights into the dynamic fields of PAMPs sensing in antiviral innate immunity and viral immune evasion. We hope it will serve the purpose of encouraging new research. This Research Topic will provide an overall picture of antiviral innate immune sensing signal pathways, regulation, and viral immune evasion. We welcome the submission of Original Research, Review, Mini-Review, Hypothesis and Theory, and Perspective articles that cover, but are not limited to, the following subtopics:


Control of Innate Antiviral Immunity by HIV-1

Control of Innate Antiviral Immunity by HIV-1
Author: Arjun Rustagi
Publisher:
Total Pages: 116
Release: 2013
Genre:
ISBN:

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Human immunodeficiency virus 1 (HIV-1) infection continues to be a major public health problem, with 34 million people infected worldwide. Cell-intrinsic innate immune defenses are essential for the control of HIV-1 infection but are subverted by the virus to establish successful infection. Interferon regulatory factor 3 (IRF3) is a central transcription factor of innate immune signaling that is activated by cellular pattern recognition receptors in response to the presence of non-self molecules (e.g. viral RNA or DNA). Activation of IRF3 induces the expression of antiviral and immunomodulatory genes whose products can suppress HIV-1 infection within target cells and regulate the adaptive immune response to infection. We have found that during acute infection HIV-1 evades innate antiviral immunity through the actions of HIV-1 viral protein u (Vpu), which interacts with IRF3 and inhibits its activity. While HIV infection eventually results in proteolytic destruction of IRF3 at later time points of acute infection, we found that inhibition of IRF3-dependent IFN-[Beta] transcription by Vpu occurs at early time points. In addition, Vpu blocked both IRF3- and NF[kappa]B-dependent activities at the IFN-[Beta] promoter. These findings led us to hypothesize that Vpu blocks IRF3 activation to prevent IRF3 from carrying out the necessary biochemical steps to drive antiviral gene expression. We investigated the process of Vpu regulation of IRF3, and found that IRF3 and Vpu form a stable complex during infection of CD4+ T cells with HIV-1. Using truncation and deletion mutants of recombinant IRF3, we mapped the binding epitope for Vpu on IRF3 to a region of IRF3 protein called the IRF association domain. This domain is the site necessary for homodimerization of IRF3 molecules after activation and interaction with transcriptional cofactors. Thus, we hypothesized that Vpu alters IRF3 dimerization and cofactor interaction. Indeed, when we examined the IRF3 activation pathway in the presence of Vpu to identify the site of the Vpu-induced block in IRF3 activity, we found that Vpu inhibited IRF3 dimerization and CBP binding. We predict that Vpu antagonism of IRF3-directed innate immunity is a key step in HIV-1 pathogenesis during acute infection. Further, IRF3 depletion and control of innate antiviral immunity by HIV-1 may correlate with disease progression in HIV-infected patients. To test these predictions, we have developed two novel monoclonal antibodies to human IRF3 to support the study of IRF3 activation and HIV-mediated IRF3 depletion among patient samples in a high-throughput manner. One of these antibodies, AR-1, is specific for activated IRF3. The other, AR-2, detects total IRF3 levels in a flow cytometric assay of blood leukocytes. Use of these new antibodies to study IRF-3 levels during HIV infection could reveal an innate immune correlate of HIV-1 disease progression, while studies to fully define the interaction between Vpu and IRF3 may reveal novel targets for the development of drugs that preserve IRF3 activity during HIV-1 infection.


Autophagy Regulation of Innate Immunity

Autophagy Regulation of Innate Immunity
Author: Jun Cui
Publisher: Springer Nature
Total Pages: 203
Release: 2019-11-14
Genre: Medical
ISBN: 981150606X

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This book discusses novel concepts and discoveries concerning the regulation of innate immunity by autophagy and autophagy-related proteins. In the past decade, there have been major advances in our understanding of the molecular mechanisms of autophagy and its physiological functions. This book highlights emerging studies on the underlying mechanisms of autophagy regulation of innate immunity, including inflammation, antiviral immunity and anti-bacterial responses and the signaling pathways that prompt or inhibit the initiation and progression of related diseases. It also offers new ideas and strategies for future drugs based on manipulating autophagy, especially selective autophagy mediated by cargo receptors. Providing a comprehensive overview of the autophagy regulation of innate immunity, it is a valuable resource for graduate students and researchers in the fields of immunology, cell biology and translational medicine.


Toll-Like Receptors (TLRs) and Innate Immunity

Toll-Like Receptors (TLRs) and Innate Immunity
Author: Stefan Bauer
Publisher: Springer Science & Business Media
Total Pages: 243
Release: 2007-12-11
Genre: Medical
ISBN: 3540721673

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Overall recent research on TLRs has led to tremendous increase in our understanding of early steps in pathogen recognition and will presumably lead to potent TLR targeting therapeutics in the future. This book reviews and highlights our recent understanding on the function and ligands of TLRs as well as their role in autoimmunity, dendritic cell activation and target structures for therapeutic intervention.