Infrared Spectroscopy Of Cluster Ions High Energy Conformer Trapping And Multiple Photon Absorption PDF Download

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Infrared Spectroscopy of Cluster Ions: High Energy Conformer Trapping and Multiple Photon Absorption

Infrared Spectroscopy of Cluster Ions: High Energy Conformer Trapping and Multiple Photon Absorption
Author: Jordan P. Beck
Publisher:
Total Pages:
Release: 2011
Genre:
ISBN:

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Infrared predissociation (IRPD) spectra of several cluster ions are presented, resulting in the emergence of two major themes. Trapped, high energy conformers are observed in argon tagged clusters. In non-argon tagged hydrated alkali metal ion clusters, multiple photon absorption processes can occur. The cluster ions discussed in this dissertation are generated by impacting neutral clusters with ions. If there is an energetic barrier between the neutral cluster configuration and the global minimum cluster ion configuration that is larger than the binding energy of the most labile ligand, then high energy conformers can be trapped. Thus, the trapped conformers retain some of the bonds of their neutral precursors. For example, neutral methanol dimer contains a hydrogen bond and a trapped, high energy Cl (CH3OH)2Ar conformer was observed which also contains a methanol0́Ø0́Ø0́Ømethanol hydrogen bond. Similar results are reported for M+(C6H6)2-4(H2O)2Ar and M+(benzyl alcohol)1(H2O)1-2Ar where IRPD spectra reveal hydrogen bonds resulting from the configurations of the neutral precursors. For most of the clusters studied, spectral features from high energy conformers and global minimum energy conformers were observed in the same spectra. However, a special case is reported in chapter 5 in which spectral features from high energy conformers and global minimum energy conformers of Li+(C6H6)2-4(H2O)2Ar were observed in different spectra corresponding to the fragmentation channel monitored. This conformer specific fragmentation greatly simplified the interpretation of the spectra and provided useful information on the cluster energetics. Conformer specific fragmentation was also observed for M+(H2O)5-7, but for a different reason. In the hydrogen bonded O-H stretching region, IRPD spectra obtained by monitoring the loss of two waters only contained features from linear hydrogen bonds. This mode dependent fragmentation is believed to be the result of multiple photon absorption. This conclusion is supported by laser-fluence dependence studies and by evaporative ensemble calculations.


Infrared Spectroscopy of Ion-hydrocarbon Clusters

Infrared Spectroscopy of Ion-hydrocarbon Clusters
Author: Oscar Rodriguez (Jr)
Publisher:
Total Pages:
Release: 2011
Genre:
ISBN:

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Many biological and environmental systems contain ion, water, and hydrophobic components; and it is the balance between these competing interactions which governs their chemistry. This Thesis aims at exploring ion0́Ø0́Ø0́Øhydrocarbon interactions, then ion0́Ø0́Ø0́Øwater0́Ø0́Ø0́Øalkane interactions. To accomplish this, a combination of gas phase infrared predissociation spectroscopy (IRPD) and tandem mass spectrometry is utilized. The solvation of alkali metal ions by methane is discussed first, beginning with the effects of multiple argon atoms on Li+0́Ø0́Ø0́ØCH4 dimer clusters followed by a study of M+(CH4)n clusters where it is revealed that ions have a weak electrostatic effect beyond the first solvent shell. Next, the argon tagging and monitoring unique fragmentation channels are used to selectively probe for high energy Li+(H2O)3-4Ar1 conformers which contain extensive water hydrogen bonding. Finally, ion0́Ø0́Ø0́Øwater0́Ø0́Ø0́Øalkane interactions are probed in Li+(H2O)n clusters containing CH4 or C6H12 molecules. Some spectra contain hydrogen bonded peaks correlating to weak water0́Ø0́Ø0́Øalkane interactions. Furthermore, there is strong evidence that high energy conformers containing water hydrogen bonding are present in the cluster ion beam. This analysis is expanded to anionic Cl-(Water)m(CH4)n clusters to compare with cations. Density functional theory or MP2 level calculations were used to support and help characterize experimental data.


Chiral Analysis

Chiral Analysis
Author: Kenneth W. Busch
Publisher: Elsevier
Total Pages: 721
Release: 2011-10-13
Genre: Science
ISBN: 0080469280

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Chiral Analysis covers an important area of analytical chemistry of relevance to a wide variety of scientific professionals. The target audience is scientific professionals with an undergraduate background in chemistry or a related discipline, specifically organic chemists, researchers in drug discovery, pharmaceutical researchers involved with process analysis or combinatorial libraries, and graduate students in chemistry. Chapters have been written with the nonspecialist in mind so as to be self-contained. * Broad coverage - spectroscopic and separation methods covered in a single volume * Up-to-date and detailed review of the various techniques available and/or under development in this field * Contributions from leading experts in the field


High-Resolution Infrared Spectroscopy of Transient Molecules Development of Broadband Optical Parametric Oscillators

High-Resolution Infrared Spectroscopy of Transient Molecules Development of Broadband Optical Parametric Oscillators
Author: Jürgen Krieg
Publisher: Cuvillier Verlag
Total Pages: 162
Release: 2012-02-13
Genre: Science
ISBN: 3736940122

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The infrared spectral region between wavelengths of 2 and 6 µm is of great importance in molecular physics. Molecules with an X-H bond (X being carbon, nitrogen or oxygen) exhibit strong vibrational transitions there, but also linear carbon clusters Cn (n=2,3,...). Many combination bands and overtones of low-energy vibrational modes also occur in this spectral range. Analyses of these spectral features allow - if highly resolved - for example the prediction of pure rotational transitions in the sub-mm wavelength regime, or help understanding the internal dynamics of the molecule. To provide radiation sources with extremely large frequency coverage, two optical parametric oscillator (OPO) systems in the wavelength regions from 2.5 to 4.1 µm and from 4.7 to 5.4 µm have been set up and characterized in this thesis. The OPO system around 5 µm wavelength is the only one in this spectral region used in high-resolution spectroscopy up to now. Both of the OPO systems have been shown to be ideal tools for spectroscopic studies delivering highly accurate transition frequencies of transient molecules, using the following example cases: The rovibrational spectrum of the fundamental cation CH2D+ around 3.2 µm wavelength has been measured with unprecedented spectral resolution and frequency accuracy. The combination of the OPO as radiation source with a cold ion trap to produce and store the ions has been proven to have a high predictive power for pure rotational transition frequencies of CH2D+. Located at around 100 to 200 GHz, these are of great importance in astrophysics. The V3 fundamental vibration of Si2C3 around 5.1 µm wavelength has been measured using the OPO and a newly built jet spectrometer for the production of transient molecules. Molecular parameters have been determined with high precision. An associated hot band originating from the V7 vibrational bending mode has been resolved and analyzed for the first time. The pure carbon clusters C3 and C7 have also been examined. For the first time, a combination band of C3 and an associated hot band were detected around 3.0 µm wavelength in the gas phase. Their analyses yield valuable information about the potential energy surface of C3. Analysis of the V5 mode of C7 delivered further proof of its rigidity, which was put into question by earlier works. Last but not least, a previously unknown associated hot band of C7 has been detected and analyzed.


Gas-Phase IR Spectroscopy and Structure of Biological Molecules

Gas-Phase IR Spectroscopy and Structure of Biological Molecules
Author: Anouk M. Rijs
Publisher: Springer
Total Pages: 409
Release: 2015-06-03
Genre: Science
ISBN: 3319192043

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The series Topics in Current Chemistry presents critical reviews of the present and future trends in modern chemical research. The scope of coverage is all areas of chemical science including the interfaces with related disciplines such as biology, medicine and materials science. The goal of each thematic volume is to give the non-specialist reader, whether in academia or industry, a comprehensive insight into an area where new research is emerging which is of interest to a larger scientific audience. Each review within the volume critically surveys one aspect of that topic and places it within the context of the volume as a whole. The most significant developments of the last 5 to 10 years are presented using selected examples to illustrate the principles discussed. The coverage is not intended to be an exhaustive summary of the field or include large quantities of data, but should rather be conceptual, concentrating on the methodological thinking that will allow the non-specialist reader to understand the information presented. Contributions also offer an outlook on potential future developments in the field. Review articles for the individual volumes are invited by the volume editors. Readership: research chemists at universities or in industry, graduate students.


Mass-selected Infrared Multiple-photon Dissociation as a Structural Probe of Gaseous Ion-molecule Complexes

Mass-selected Infrared Multiple-photon Dissociation as a Structural Probe of Gaseous Ion-molecule Complexes
Author: Richard Alexander Marta
Publisher:
Total Pages: 290
Release: 2009
Genre:
ISBN:

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Mass-selected infrared multiple photon spectroscopy (IRMPD), Fourier transform ion cyclotron resonance (FT-ICR) kinetic experiments, RRKM and electronic structure calculations have been performed in order to propose a complex mechanism involving the formation of the proton-bound dimer of water (H5O2) from 1,1,3,3-tetrafluorodimethyl ether. It has been found that the reaction is facilitated by a series of sequential exothermic bimolecular ion-molecule reactions. Evidence for the dominant mechanistic pathway involving the reaction of CF2H-O=CHF2, an ion of m/z 99, with water is presented. The primary channel occurs via nucleophilic attack of water on the ion of m/z 99 (CF2H-O=CHF), to lose formyl fluoride and yield protonated difluoromethanol (m/z 69). Association of a second water molecule with protonated difluoromethanol generates a reactive intermediate which decomposes via a 1,4-elimination to release hydrogen fluoride and yield the proton-bound dimer of water and formyl fluoride (m/z 67). The 1,4-elimination of hydrogen fluoride is found to be strongly supported by the results of both RRKM theory and electronic structure calculations. Lastly, the elimination of formyl fluoride occurs by the association of a third water molecule to produce H5O2 (m/z 37). The most probable isomeric forms of the ions with m/z 99 and 69 were found using IRMPD spectroscopy and electronic structure theory calculations. Thermochemical information for reactant, transition and product species was obtained using MP2/aug-cc-pVQZ//MP2(full)/6-31G(d) level of theory.


Advanced Fragmentation Methods in Biomolecular Mass Spectrometry

Advanced Fragmentation Methods in Biomolecular Mass Spectrometry
Author: Frederik Lermyte
Publisher: Royal Society of Chemistry
Total Pages: 359
Release: 2020-12-11
Genre: Science
ISBN: 1839161108

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Breaking down large biomolecules into fragments in a controlled manner is key to modern biomolecular mass spectrometry. This book is a high-level introduction, as well as a reference work for experienced users, to ECD, ETD, EDD, NETD, UVPD, SID, and other advanced fragmentation methods. It provides a comprehensive overview of their history, mechanisms, instrumentation, and key applications. With contributions from leading experts, this book will act as an authoritative guide to these methods. Aimed at postgraduate and professional researchers, mainly in academia, but also in industry, it can be used as supplementary reading for advanced students on mass spectrometry or analytical (bio)chemistry courses.