Infrared Multiple Photon Dissociation Mass Spectrometry Of Monosaccharides Disaccharides Trisaccharides And Their Derivatives For Isomeric Differentiation PDF Download

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Infrared Multiple Photon Dissociation - Mass Spectrometry of Monosaccharides, Disaccharides, Trisaccharides and Their Derivatives for Isomeric Differentiation

Infrared Multiple Photon Dissociation - Mass Spectrometry of Monosaccharides, Disaccharides, Trisaccharides and Their Derivatives for Isomeric Differentiation
Author: Yanglan Tan
Publisher:
Total Pages: 145
Release: 2014
Genre:
ISBN:

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Sulfates which were structurally elucidated by IRMPD spectroscopy with a tunable OPO. The IRMPD spectra of monosaccharide derivative isomers displayed remarkable differences in the O-H and N-H stretching IR region. The results also suggested that gas-phase conformation, affected by ionization state or chemical modifications, exhibited diagnostic IR absorbances and characteristic photodissociation behavior. In Chapter 5, a top-down approach was employed to characterize isomeric variants of glucose-based trisaccharides. The trisaccharides were fragmented and mass selected to the key disaccharide fragments. The linkage and anomericity of the disaccharide substructures were then differentiated by wavelength-dependent IRMPD using the CO2 laser. On the basis of these results, variable-wavelength IRMPD provides a promising method to characterize carbohydrate structures and thus differentiate isomer variants by mass spectrometry.


The Use of Infrared Multiple Photon Dissociation and Fourier Transform Ion Cyclotron Resonance Mass Spectrometry to Study the Thermochemical Dynamics of Dephosphorylation and the Spectral and Density Functional Theory Determined Structural Characteristics of Monosaccharide Isomers

The Use of Infrared Multiple Photon Dissociation and Fourier Transform Ion Cyclotron Resonance Mass Spectrometry to Study the Thermochemical Dynamics of Dephosphorylation and the Spectral and Density Functional Theory Determined Structural Characteristics of Monosaccharide Isomers
Author:
Publisher:
Total Pages:
Release: 2009
Genre:
ISBN:

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Photon (vibrationally resonant) induced dissociation or action spectra, spanning the C-H-and O-H stretch regions, were then acquired for four rubidium cation-bound glycosides. Comparison of the experimental and Density Functional Theory calculated spectra revealed a network of intermolecular hydrogen bonding and rubidium attachments that provided the means to differentiate D-glucoside and D-galactoside anomers in the O-H stretching region of the infrared spectrum. In the second project, two cw-CO2 lasers were also set up for gas-phase experiments. Dephosphorylation rate constants (at varying laser powers) were obtained for both positively and negatively charged phosphopeptide ions at three different wavelengths. In these experiments, the dissociation rate constants favored the negatively charged species at all wavelengths (a result of lower activation energies) as the overall Arrhenius activation energies were independent of vibrational mode intensities.


Mass-selected Infrared Multiple-photon Dissociation as a Structural Probe of Gaseous Ion-molecule Complexes

Mass-selected Infrared Multiple-photon Dissociation as a Structural Probe of Gaseous Ion-molecule Complexes
Author: Richard Alexander Marta
Publisher:
Total Pages: 290
Release: 2009
Genre:
ISBN:

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Mass-selected infrared multiple photon spectroscopy (IRMPD), Fourier transform ion cyclotron resonance (FT-ICR) kinetic experiments, RRKM and electronic structure calculations have been performed in order to propose a complex mechanism involving the formation of the proton-bound dimer of water (H5O2) from 1,1,3,3-tetrafluorodimethyl ether. It has been found that the reaction is facilitated by a series of sequential exothermic bimolecular ion-molecule reactions. Evidence for the dominant mechanistic pathway involving the reaction of CF2H-O=CHF2, an ion of m/z 99, with water is presented. The primary channel occurs via nucleophilic attack of water on the ion of m/z 99 (CF2H-O=CHF), to lose formyl fluoride and yield protonated difluoromethanol (m/z 69). Association of a second water molecule with protonated difluoromethanol generates a reactive intermediate which decomposes via a 1,4-elimination to release hydrogen fluoride and yield the proton-bound dimer of water and formyl fluoride (m/z 67). The 1,4-elimination of hydrogen fluoride is found to be strongly supported by the results of both RRKM theory and electronic structure calculations. Lastly, the elimination of formyl fluoride occurs by the association of a third water molecule to produce H5O2 (m/z 37). The most probable isomeric forms of the ions with m/z 99 and 69 were found using IRMPD spectroscopy and electronic structure theory calculations. Thermochemical information for reactant, transition and product species was obtained using MP2/aug-cc-pVQZ//MP2(full)/6-31G(d) level of theory.


Coupling of an Optical Parametric Oscillator Laser and Fourier Transform Ion Cyclotron Resonance Mass Spectrometry to Differentiate Epimeric Monosaccharides

Coupling of an Optical Parametric Oscillator Laser and Fourier Transform Ion Cyclotron Resonance Mass Spectrometry to Differentiate Epimeric Monosaccharides
Author: Emilio Benoza Cagmat
Publisher:
Total Pages:
Release: 2010
Genre:
ISBN:

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ABSTRACT: Structures of carbohydrates dictate their biological activities. Since carbohydrates are found with numerous stereoisomeric forms, structural determination and differentiation are huge challenges to analytical chemists. Glycosoaminoglycans (GAGs) are linear polysaccharides composed of repeating monosaccharide units. Special types of GAGs known as heparins (HPs) and heparan sufates (HS) contain D-glucuronic and L-iduronic acids. These acids are epimers; they differ only in the orientation of the carboxylic acid group at carbon number 5. Mass spectrometry cannot differentiate the two compounds. By coupling a Fourier transform ion cyclotron mass spectrometry and an optical parametric oscillator laser, the two compounds were differentiated, using infrared multiple photon dissociation spectroscopy.


Characterization of Several Small Biologically Relevant Molecules by Infrared Multiple Photon Dissociation Spectroscopy and Electronic Structure Calculations

Characterization of Several Small Biologically Relevant Molecules by Infrared Multiple Photon Dissociation Spectroscopy and Electronic Structure Calculations
Author: Sabrina M. Martens
Publisher:
Total Pages: 109
Release: 2011
Genre:
ISBN:

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Infrared multiple photon dissociation (IRMPD) spectroscopy has been coupled with electronic structure calculations in order to elucidate the structures of several small biological molecules including: uracil, 5-fluorouracil, 5-fluorocytosine, ferulic acid, and a number of their related analogs. IRMPD is a powerful technique, that when combined with electronic structure calculations can provide convincing evidence for the structural characterization of ions in the gas phase. Isomers of uracil and 5-fluorouracil (5-FU) have been characterized by calculations performed at the MP2(full)/aug-cc-pVTZ level of theory; however, infrared multiple photon dissociation spectroscopy experiments proved to be unsuccessful for these species. Geometry optimization and frequency calculations have isolated the dominant isomer(s) for neutral and deprotonated uracil and 5-fluorouracil, along with several cluster interactions involving water, methanol, ammonia, and methylamine. For both uracil and 5-FU, a single relevant neutral isomer was determined, with each isomer existing in the diketo, as opposed to the enol form. Following the deprotonation of this neutral isomer, both uracil and 5-FU were permitted to form anionic cluster ions with water, methanol, ammonia, or methylamine, and based on the relative Gibbs free energies (298 K) of the calculated isomers, relevant cluster interactions were determined. For each cluster, several sites of intramolecular interaction were found to exist; however, interaction at the site of deprotonation was the most favourable in every instance. Ionic hydrogen bond interactions have been found in several clusters formed by 5-fluorocytosine (5-FC).


Infrared Multiple-photon Dissociation of Small Organic Sulfoxides

Infrared Multiple-photon Dissociation of Small Organic Sulfoxides
Author: Marko Peter Banjavčiʹc
Publisher:
Total Pages:
Release: 1999
Genre:
ISBN:

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The infrared multiple-photon dissociation of several small organic sulfoxides was studied in order to provide some insight in the dissociative product channels for this class of molecules. Vibrational excitation was achieved with a TEA CO2 laser and photofragments were identified with a laser ionized time of light mass spectrometer. A beam of 10.5 eV photons generated in a static xenon gas tripling cell from a tightly focused Nd:YAG third harmonic beam of light was used to ionize the molecules and fragment species. The photoionization mass spectra were found to contain fewer fragmentation species than the corresponding electron impact ionization mass spectra. Numerous product species were observed from skeletal rearrangement reactions despite the lower level of energy excitation from the photoionization process. The infrared photolysis wavelength dependence of dimethyl sulfoxide indicated that the maximum abundance for the major fragmentation species occurred at (or near) 1085.8 cm−1. The major products at 1085.8 cm−1 were [H3CSO]+ and [CH3]+. Minor products were also observed at a higher output power threshold like the skeletal rearrangement species [H3CS]+ and [OCH3]+. With the infrared photolysis wavelength dependence of methyl phenyl sulfoxide, the major product species ([CH3]+ and [OSCH3]+) had a maximum abundance near 1086.9 cm−1 . Small mass fragment species (like [HCS]+, [C4H5]+ and [C4H3]+) had a maximum abundance near 1080 cm−1 while large mass fragment species ([C6H8S]+ and [C6H5SO]+) had a maximum abundance that was further red-shifted (1058.9 and 1050.4 cm−1 , respectively). The photolysis at 1085.8 cm−1 generated the high mass fragment species ([C6H5SO]+, [C6H8S]+ and [C5H5S]+) at all CO2 laser output powers but a plateau in the abundance was observed at higher output powers. The smaller mass fragmentation species only appeared after a threshold power was surpassed. The maximum abundance for the various fragmentation species of sec-butyl methyl sulfoxide occurred near 1072 cm−1. The CO2 laser output power dependence for the formation of the butane, butyl and butene ions indicated all three were generated at all output powers with an abundance plateau or decline occurring at higher output powers. Fragmentation species were observed from the butyl group primary products with the power threshold increasing for the sequentially smaller secondary species.


Assessing Isomeric Heterogeneity of Carbohydrates by Ion Mobility Mass Spectrometry (IMMS)

Assessing Isomeric Heterogeneity of Carbohydrates by Ion Mobility Mass Spectrometry (IMMS)
Author: Hongli Li
Publisher:
Total Pages:
Release: 2013
Genre:
ISBN: 9781303241413

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IMMS analysis is fast, sensitive, universal, is capable of resolving isomers and is able to provide unique mobility identities and valuable MS n data on the basis of mobility resolved species including precursor and product ions. Ultimately, IMMS could serve as a novel tool for high throughput identification of glycoprotein.


Laser Photodissociation and Spectroscopy of Mass-separated Biomolecular Ions

Laser Photodissociation and Spectroscopy of Mass-separated Biomolecular Ions
Author: Nicolas C. Polfer
Publisher: Springer
Total Pages: 0
Release: 2013-09-13
Genre: Science
ISBN: 9783319012513

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This lecture notes book presents how enhanced structural information of biomolecular ions can be obtained from interaction with photons of specific frequency - laser light. The methods described in the book "Laser photodissociation and spectroscopy of mass-separated biomolecular ions" make use of the fact that the discrete energy and fast time scale of photoexcitation can provide more control in ion activation. This activation is the crucial process producing structure-informative product ions that cannot be generated with more conventional heating methods, such as collisional activation. The book describes how the powerful separation capabilities and sensitivity of mass spectrometry (MS) can be combined with the structural insights from spectroscopy by measuring vibrational and electronic spectra of trapped analytes. The implementation of laser-based photodissociation techniques in MS requires basic knowledge of tunable light sources and ion trapping devices. This book introduces the reader to key concepts and approaches in molecular spectroscopy, and the light sources and ion traps employed in such experiments. The power of the methods is demonstrated by spectroscopic interrogation of a range of important biomolecular systems, including peptides, proteins, and saccharides, with laser light in the ultraviolet-visible, and infrared range. The book "Laser photodissociation and spectroscopy of mass-separated biomolecular ions" is an indispensable resource for students and researchers engaged or interested in this emerging field. It provides the solid background of key concepts and technologies for the measurements, discusses state-of-the-art experiments, and provides an outlook on future developments and applications.