Genetic Variability In Hatchery And Wild Populations Of Coho Salmon Oncorhynchus Kisutch In Oregon PDF Download

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Mate Choice of Wild Spawning Coho Salmon (Oncorhynchus Kisutch) in the Umpqua River, Oregon

Mate Choice of Wild Spawning Coho Salmon (Oncorhynchus Kisutch) in the Umpqua River, Oregon
Author: Amelia C. Whitcomb
Publisher:
Total Pages: 91
Release: 2012
Genre: Coho salmon
ISBN:

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Evidence for reduced reproductive success (RS) of wild spawning hatchery-reared fish invites serious consideration with regard to the detrimental effects on subsequent generations of wild populations. Mate choice was evaluated as a potential mechanism contributing to these observed RS differences using a previous pedigree of wild spawning hatchery-reared and wild origin coho salmon (Oncorhynchus kisutch). Genetic variance at immune-relevant genes was used as ametric toexaminematechoice. Twoyears (2005 and2006)of threewild spawning mate pair classes were examined: wild x wild (W x W), hatchery x hatchery (H x H), and wild x hatchery (W x H). We tested for: (1) a departure from random expectations with regard to mate pair allelic diversity at immune-relevant markers, (2) a correlation between immune-relevant gene diversity and mate pair RS, and (3) distinguishable differences between mate choice strategies used by hatchery-reared and wild origin coho. Eight immune-relevant gene-linked microsatellite markers were used to evaluate mate choice; four linked to immune-relevant expressed sequence tags (ESTs) and four linked to the Major Histocompatibility Complex (MHC). We found evidence for non-random mating between 2006 W x H mate pairs at BHMS429,an MHC-linked marker, and at SsalR016TKU, an immune-relevantEST-linked marker, which was identified as a vasodilator-stimulated phosphoprotein. Non-random mating was also evident between 2005 H x H pairs at SsalR015TKU, an immune-relevantEST-linkedmarker, thoughno putativegene was identified. All other pair classes did not display a significant mate choice signature. We found a significant correlation between mate pair RS and immune gene diversity among 2005 and 2006 W x W mate pairs as well as 2006 W x H mate pairs. Notably, H x H mate pair RS was not correlated to immune gene diversity in either year. Results suggest that mate choice and genetic compatibility may influence fitness of wild spawning coho.


Patterns of Natural Selection and Demography in Coastal Oregon Coho Salmon (Oncorhynchus Kisutch) Populations

Patterns of Natural Selection and Demography in Coastal Oregon Coho Salmon (Oncorhynchus Kisutch) Populations
Author: Marc Aaron Johnson
Publisher:
Total Pages: 222
Release: 2009
Genre: Coho salmon
ISBN:

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For Pacific salmon, the evolution of local adaptations depends upon the species' propensity to return, or "home", to natal streams at time of reproduction. Pacific salmon use olfactory cues to guide homing behavior, yet little is known about the genetics of olfaction in salmon. In this study, I use putatively neutral microsatellite markers to estimate demographic parameters and describe the population genetic structure of Oregon Coastal coho salmon (Oncorhynchus kisutch). Microsatellite analyses indicated weak population structure among coho populations (overall [theta] = 0.021), modulated by moderate levels of migration (straying). Allelic richness was higher in wild populations than both hatchery populations and wild populations from lake dominated systems. The Coos and Nehalem river populations appeared to be primary migrant sources, possibly elevating allelic richness for central coast populations. I then used genomic sequence data from nine species of salmon and trout to infer the evolutionary history for eight olfactory receptor genes, representing two major gene classes (main olfactory receptors and ORAs). Through a maximum likelihood based analysis of site-specific, non-synonymous to synonymous nucleotide substitution rates, I found strong evidence for positive selection having influenced the diversification of four paralogous main olfactory receptor genes. Main olfactory receptor orthologues appeared highly conserved among species, yet site-specific positive selection may be affecting interspecific divergence of an ORA gene in salmonids. Finally, I used molecular markers linked to olfactory receptor genes to test for a signal of selection among coho salmon populations from different rivers. By examining interlocus variance of F[subscript]ST, I found evidence for directional selection on an olfactory receptor gene-linked marker in coho salmon populations. Pairwise [theta] values calculated from gene-linked markers were nearly an order of magnitude greater than observed for putatively neutral microsatellites.


The Genetic Structure of Chinook and Coho Salmon Populations in California, with a Note on the Genetic Variability in Sturgeon (Acipenseridae).

The Genetic Structure of Chinook and Coho Salmon Populations in California, with a Note on the Genetic Variability in Sturgeon (Acipenseridae).
Author: Devin Michael Bartley
Publisher:
Total Pages: 432
Release: 1987
Genre: Acipenser
ISBN:

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Populations of chinook, Oncorhynchus tshawytscha, and coho salmon, O. kisutch, from Northern California and four species of North American sturgeon were analyzed by horizontal starch-gel electrophoresis. The products of 53 gene loci from 27 enzyme systems were used to characterize the genetic structure of 35 groups of hatchery and wild chinook salmon. The distribution of specific alleles, cluster analysis based on genetic identities, analyses of gene flow, and gene diversity analyses indicated that groups of chinook salmon from the three major river drainages in California were genetically differentiated. The products of 45 gene loci from 21 enzyme systems were used to characterize the genetic structure of 27 groups of coho salmon. Most of the observed genetic variation was due to rare alleles occurring in only a few groups of salmon. No obvious association of specific alleles with geographic area was observed and the low level of genetic variability made patterns of genetic structure or associations among the groups of coho salmon difficult to determine. The application of biochemical-genetic analyses to the management of chinook and coho salmon fisheries was addressed. A comparison of hatchery groups of chinook and coho salmon with wild groups in the same area revealed that hatchery stocks generally reflect the genetic structure of the local populations. The genetic differentiation of chinook salmon by drainage could provide fishery scientists with a means to identify specific groups of chinook salmon. The application of this technique to manage coho salmon populations is problematic at the present given the seemingly random distribution of alleles and the low levels of genetic variability. The products of seven gene loci were used to identify hybridization between chinook and coho salmon in a collection of salmon from a tributary to the Trinity River. The implications of a group of hybrid fish in the wild were discussed in terms of genetic resource conservation and disease transmission. The products of 20 gene loci were used to characterize the genetic structure and relationship of four species of sturgeon: Acipenser transmontanus, A. medirostris, A. fulvescens, and A. brevirostrum. Fixed allelic differences existed among the four species at several gene loci and each species could be unambiguously identified by its genetic profile.


Phenotypic Comparison of Hatchery and Wild Coho Salmon (Oncorhynchus Kisutch) in Oregon, Washington, and California

Phenotypic Comparison of Hatchery and Wild Coho Salmon (Oncorhynchus Kisutch) in Oregon, Washington, and California
Author: Randy Carl Hjort
Publisher:
Total Pages: 100
Release: 1979
Genre: Coho salmon
ISBN:

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Phenotypic similarities of coho salmon (Oncorhynchus kisutch) stocks from Oregon, Washington, and California were compared using agglomerative and divisive cluster analyses. The phenotypic characters evaluated included the following: 1) the isozyme gene frequencies of transferrin and phosphoglucose isomerase; 2) the life history characters time of peak spawning and proportion of females in the population; and 3) the morphological characters scales in the lateral series, scales above the lateral line, anal rays, gill rakers, branchiostegal rays and vertebrae. Coho salmon stocks from similar environments were phenotypically similar. The groups of stocks found to be similar by the agglomerative cluster analysis were: 1) wild stocks from the northern Oregon coast; 2) wild stocks from the southern Oregon coast; 3) stocks from hatcheries using wild coho salmon for an egg source; 4) stocks from large stream systems; and 5) hatchery stocks from the northern Oregon coast. There were three trends involved with the clustering patterns: 1) stocks that are geographically close tend to be phenotypically similar; 2) stocks from large stream systems were more similar to each other than to stocks from smaller stream systems, independent of geographic nearness; and 3) hatchery stocks were more similar to each other than to wild stocks, even those in their respective stream systems, and wild stocks were more similar to each other than to hatchery stocks, even those in their respective stream systems. These trends may be useful to fishery managers for selecting donor stocks from hatcheries for transplanting to stream systems or other hatcheries. Individual phenotypic characters were correlated with characters of the stream systems. Two agglomerative cluster analyses of the characters of the stocks and the characters of the stream system were used to determine whether stream types corresponded to phenotype- types. The clustering patterns of phenotypic characters of the stocks were not similar to the clustering found for characteristics of the stream systems from which the stocks came.


Fishery Bulletin

Fishery Bulletin
Author:
Publisher:
Total Pages: 216
Release: 1996
Genre: Fisheries
ISBN:

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Federal Register

Federal Register
Author:
Publisher:
Total Pages: 1310
Release: 1991-06-24
Genre: Administrative law
ISBN:

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