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Estimation of Mortality Rates in Stage-Structured Population

Estimation of Mortality Rates in Stage-Structured Population
Author: Simon N. Wood
Publisher: Springer Science & Business Media
Total Pages: 113
Release: 2013-03-08
Genre: Social Science
ISBN: 3642499791

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The stated aims of the Lecture Notes in Biomathematics allow for work that is "unfinished or tentative". This volume is offered in that spirit. The problem addressed is one of the classics of statistical ecology, the estimation of mortality rates from stage-frequency data, but in tackling it we found ourselves making use of ideas and techniques very different from those we expected to use, and in which we had no previous experience. Specifically we drifted towards consideration of some rather specific curve and surface fitting and smoothing techniques. We think we have made some progress (otherwise why publish?), but are acutely aware of the conceptual and statistical clumsiness of parts of the work. Readers with sufficient expertise to be offended should regard the monograph as a challenge to do better. The central theme in this book is a somewhat complex algorithm for mortality estimation (detailed at the end of Chapter 4). Because of its complexity, the job of implementing the method is intimidating. Any reader interested in using the methods may obtain copies of our code as follows: Intelligible Structured Code 1. Hutchinson and deHoog's algorithm for fitting smoothing splines by cross validation 2. Cubic covariant area-approximating splines 3. Cubic interpolating splines 4. Cubic area matching splines 5. Hyman's algorithm for monotonic interpolation based on cubic splines. Prototype User-Hostile Code 6. Positive constrained interpolation 7. Positive constrained area matching 8. The "full method" from chapter 4 9. The "simpler" method from chapter 4.


Stage-Structured Populations

Stage-Structured Populations
Author: Bryan Manly
Publisher: Springer Science & Business Media
Total Pages: 198
Release: 2013-03-09
Genre: Science
ISBN: 9400908431

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This book provides a review of methods for obtaining and analysing data from stage-structured biological populations. The topics covered are sam pling designs (Chapter 2), the estimation of parameters by maximum likelihood (Chapter 3), the analysis of sample counts of the numbers cif individuals in different stages at different times (Chapters 4 and 5), the analysis of data using Leslie matrix types of model (Chapter 6) and key factor analysis (Chapter 7). There is also some discussion of the approaches to modelling and estimation that have been used in five studies of particular populations (Chapter 8). There is a large literature on the modelling of biological populations, and a multitude of different approaches have been used in this area. The various approaches can be classified in different ways (Southwood, 1978, ch. 12), but for the purposes of this book it is convenient to think of the three categories mathematical, statistical and predictive modelling. Mathematical modelling is concerned largely with developing models that capture the most important qualitative features of population dynamics. In this case, the models that are developed do not have to be compared with data from natural populations. As representations of idealized systems, they can be quite informative in showing the effects of changing parameters, indicating what factors are most important in promoting stability, and so on.


Stage-structured Demography in Stochastic Environments

Stage-structured Demography in Stochastic Environments
Author: Raziel Joseph Davison
Publisher: Stanford University
Total Pages: 137
Release: 2011
Genre:
ISBN:

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Populations living in natural environments experience fluctuations in environmental conditions that drive variability in demographic rates. This dissertation develops new and existing mathematical methods for studying environmental stochasticity and uses these tools to investigate the role of environmental stochasticity in driving observed population dynamics and plant life history evolution. In the first two chapters I develop new approaches to a classic method in population biology, the life table response experiment (LTRE). Whereas existing methods used time-averaged demographic rates and deterministic sensitivities to decompose observed differences in population growth rates, this new method allows estimation of the contributions to those differences made by variances in demographic rates as well as by mean rate values. I use this stochastic LTRE to show how differential variability in the vital rates of Anthyllis vulneraria (kidney vetch) contribute to differences in the population growth rates of nine populations growing in southwest Belgium; we also show how the effects of demographic rate variability depend on soil depth, where the greater moisture retention of deeper soils buffers populations against the otherwise negative effects of demographic variability. The second chapter provides a different approach to LTRE that uses an iterated two-factor decomposition of the small noise approximation of the stochastic population growth rate to quantify contributions to that growth rate made by: (i) mean vital rates, (ii) temporal variability in vital rates, (iii) elasticities of the population growth rate to individual vital rates, and (iv) correlations between vital rates across the study period. Contributions of elasticities tell us about differences in local selection pressures acting on distinct populations and contributions of correlations tell us about differences in the phenotypic tradeoffs associated with vital rates. I use this new method to show how these differences drive dynamics in two species: Anthyllis vulneraria (the same populations studied in the first chapter) and Cypripedium calceolus (lady's slipper orchid). In Anthyllis vulneraria, variability in large adult fertility and seedling survival made the largest contributions; there were also effects of differences in elasticities of large adult fertility and survival, as well as differences in the correlations between rapid growth and survival in seedlings (a survival cost of rapid early development), between large adult fertility and survival (a survival cost of reproduction) and between large adult fertility and seedling survival. In Cypripedium calceolus, population growth rates were driven most by differences in the elasticities to the probabilities of adult stasis vs. entering dormancy, as well as by differences in the variability and tradeoffs associated with adult dormancy; correlation played a role through differences in the survival payoff of dormancy vs. the complimentary fertility cost of dormancy in terms of lost opportunity for reproduction. The third and final chapter investigates the role of fire disturbance in driving the life histories and population-level dynamics of five woody plant species growing in the Brazilian cerrado, a savannah-forest mosaic in which woody vegetation cover is primarily mediated by fire disturbance. This study presents a set of diagnostics that use demographic responses to recurring disturbance to categorize species along a continuum of adaptation: on one end we find 'resistant' species that must weather disturbance in order to attain large sizes that are buffered against fire-induced mortality; on the other end we find 'resilient' species that are relatively indifferent to disturbance and harness transient opportunities afforded by early post-fire successional habitats in order to take advantage of increased nutrient availability and reduced competition. Each of these chapters uses stochastic demographic analysis to extend theory describing the dynamics of populations in variable environments; together, these studies present a variegated perspective on the role of environmental stochasticity that provides new methods and novel perspectives that should be useful in the study of population biology and life history evolution.


Estimation and Analysis of Insect Populations

Estimation and Analysis of Insect Populations
Author: Lyman L. McDonald
Publisher: Springer
Total Pages: 518
Release: 1989
Genre: Nature
ISBN:

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The book, Estimation and Analysis of Insect Populations, is about estimation of population parameters in stage frequency structured populations and the subsequent use of this information in development of mathematical and computer models. The unique contribution of this work is the extensive, comparative review of statistical methods used in the estimation of stage frequency parameters, the review of modeling techniques, and presentation of new approaches to both parameter estimation and modeling. Thus, this book will be of value in both pedagogic and research applications. This book will be of interest to advanced undergraduate students, graduate students, and research scientists in the fields of statistics, entomology, and other areas of applied population ecology. It could well serve as either the primary text or as an important reference in courses involving estimation, analysis, and modeling of stage frequency structured populations. As such, advertisement should be directed toward academic, departments and research laboratories involved in natural resource management (e.g. Fisheries and Wildlife, Entomology, Forestry), or applied mathematics (e.g. Statistics).


Sensitivity Analysis: Matrix Methods in Demography and Ecology

Sensitivity Analysis: Matrix Methods in Demography and Ecology
Author: Hal Caswell
Publisher: Springer
Total Pages: 308
Release: 2019-04-02
Genre: Social Science
ISBN: 3030105342

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This open access book shows how to use sensitivity analysis in demography. It presents new methods for individuals, cohorts, and populations, with applications to humans, other animals, and plants. The analyses are based on matrix formulations of age-classified, stage-classified, and multistate population models. Methods are presented for linear and nonlinear, deterministic and stochastic, and time-invariant and time-varying cases. Readers will discover results on the sensitivity of statistics of longevity, life disparity, occupancy times, the net reproductive rate, and statistics of Markov chain models in demography. They will also see applications of sensitivity analysis to population growth rates, stable population structures, reproductive value, equilibria under immigration and nonlinearity, and population cycles. Individual stochasticity is a theme throughout, with a focus that goes beyond expected values to include variances in demographic outcomes. The calculations are easily and accurately implemented in matrix-oriented programming languages such as Matlab or R. Sensitivity analysis will help readers create models to predict the effect of future changes, to evaluate policy effects, and to identify possible evolutionary responses to the environment. Complete with many examples of the application, the book will be of interest to researchers and graduate students in human demography and population biology. The material will also appeal to those in mathematical biology and applied mathematics.


Structured-Population Models in Marine, Terrestrial, and Freshwater Systems

Structured-Population Models in Marine, Terrestrial, and Freshwater Systems
Author: Shripad Tuljapurkar
Publisher: Springer Science & Business Media
Total Pages: 644
Release: 2012-12-06
Genre: Science
ISBN: 1461559731

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In the summer of 1993, twenty-six graduate and postdoctoral stu dents and fourteen lecturers converged on Cornell University for a summer school devoted to structured-population models. This school was one of a series to address concepts cutting across the traditional boundaries separating terrestrial, marine, and freshwa ter ecology. Earlier schools resulted in the books Patch Dynamics (S. A. Levin, T. M. Powell & J. H. Steele, eds., Springer-Verlag, Berlin, 1993) and Ecological Time Series (T. M. Powell & J. H. Steele, eds., Chapman and Hall, New York, 1995); a book on food webs is in preparation. Models of population structure (differences among individuals due to age, size, developmental stage, spatial location, or genotype) have an important place in studies of all three kinds of ecosystem. In choosing the participants and lecturers for the school, we se lected for diversity-biologists who knew some mathematics and mathematicians who knew some biology, field biologists sobered by encounters with messy data and theoreticians intoxicated by the elegance of the underlying mathematics, people concerned with long-term evolutionary problems and people concerned with the acute crises of conservation biology. For four weeks, these perspec tives swirled in discussions that started in the lecture hall and carried on into the sweltering Ithaca night. Diversity mayor may not increase stability, but it surely makes things interesting.


Cumulated Index Medicus

Cumulated Index Medicus
Author:
Publisher:
Total Pages: 1352
Release: 1994
Genre: Medicine
ISBN:

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