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Dynamics and Pattern Formation in an Oscillatory Reaction-diffusion System

Dynamics and Pattern Formation in an Oscillatory Reaction-diffusion System
Author: Bradley Thomas Marts
Publisher:
Total Pages: 246
Release: 2007
Genre: Dynamics
ISBN:

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Where possible we have compared our experimental results with published theory either analytic or numeric. In the cases where no theory exists we have done our best to present a numerical simulation, give an analytic explanation for our observations, or present an ansatz solution to a theoretical model.


Spatial Dynamics and Pattern Formation in Biological Populations

Spatial Dynamics and Pattern Formation in Biological Populations
Author: Ranjit Kumar Upadhyay
Publisher: CRC Press
Total Pages: 280
Release: 2021-02-24
Genre: Mathematics
ISBN: 100033435X

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The book provides an introduction to deterministic (and some stochastic) modeling of spatiotemporal phenomena in ecology, epidemiology, and neural systems. A survey of the classical models in the fields with up to date applications is given. The book begins with detailed description of how spatial dynamics/diffusive processes influence the dynamics of biological populations. These processes play a key role in understanding the outbreak and spread of pandemics which help us in designing the control strategies from the public health perspective. A brief discussion on the functional mechanism of the brain (single neuron models and network level) with classical models of neuronal dynamics in space and time is given. Relevant phenomena and existing modeling approaches in ecology, epidemiology and neuroscience are introduced, which provide examples of pattern formation in these models. The analysis of patterns enables us to study the dynamics of macroscopic and microscopic behaviour of underlying systems and travelling wave type patterns observed in dispersive systems. Moving on to virus dynamics, authors present a detailed analysis of different types models of infectious diseases including two models for influenza, five models for Ebola virus and seven models for Zika virus with diffusion and time delay. A Chapter is devoted for the study of Brain Dynamics (Neural systems in space and time). Significant advances made in modeling the reaction-diffusion systems are presented and spatiotemporal patterning in the systems is reviewed. Development of appropriate mathematical models and detailed analysis (such as linear stability, weakly nonlinear analysis, bifurcation analysis, control theory, numerical simulation) are presented. Key Features Covers the fundamental concepts and mathematical skills required to analyse reaction-diffusion models for biological populations. Concepts are introduced in such a way that readers with a basic knowledge of differential equations and numerical methods can understand the analysis. The results are also illustrated with figures. Focuses on mathematical modeling and numerical simulations using basic conceptual and classic models of population dynamics, Virus and Brain dynamics. Covers wide range of models using spatial and non-spatial approaches. Covers single, two and multispecies reaction-diffusion models from ecology and models from bio-chemistry. Models are analysed for stability of equilibrium points, Turing instability, Hopf bifurcation and pattern formations. Uses Mathematica for problem solving and MATLAB for pattern formations. Contains solved Examples and Problems in Exercises. The Book is suitable for advanced undergraduate, graduate and research students. For those who are working in the above areas, it provides information from most of the recent works. The text presents all the fundamental concepts and mathematical skills needed to build models and perform analyses.


Dissipative Solitons in Reaction Diffusion Systems

Dissipative Solitons in Reaction Diffusion Systems
Author: Andreas Liehr
Publisher: Springer Science & Business Media
Total Pages: 227
Release: 2013-03-27
Genre: Science
ISBN: 3642312519

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Why writing a book about a specialized task of the large topic of complex systems? And who will read it? The answer is simple: The fascination for a didactically valuable point of view, the elegance of a closed concept and the lack of a comprehensive disquisition. The fascinating part is that field equations can have localized solutions exhibiting the typical characteristics of particles. Regarding the field equations this book focuses on, the field phenomenon of localized solutions can be described in the context of a particle formalism, which leads to a set of ordinary differential equations covering the time evolution of the position and the velocity of each particle. Moreover, starting from these particle dynamics and making the transition to many body systems, one considers typical phenomena of many body systems as shock waves and phase transitions, which themselves can be described as field phenomena. Such transitions between different level of modelling are well known from conservative systems, where localized solutions of quantum field theory lead to the mechanisms of elementary particle interaction and from this to field equations describing the properties of matter. However, in dissipative systems such transitions have not been considered yet, which is adjusted by the presented book. The elegance of a closed concept starts with the observation of self-organized current filaments in a semiconductor gas discharge system. These filaments move on random paths and exhibit certain particle features like scattering or the formation of bound states. Neither the reasons for the propagation of the filaments nor the laws of the interaction between the filaments can be registered by direct observations. Therefore a model is established, which is phenomenological in the first instance due to the complexity of the experimental system. This model allows to understand the existence of localized structures, their mechanisms of movement, and their interaction, at least, on a qualitative level. But this model is also the starting point for developing a data analysis method that enables the detection of movement and interaction mechanisms of the investigated localized solutions. The topic is rounded of by applying the data analysis to real experimental data and comparing the experimental observations to the predictions of the model. A comprehensive publication covering the interesting topic of localized solutions in reaction diffusion systems in its width and its relation to the well known phenomena of spirals and patterns does not yet exist, and this is the third reason for writing this book. Although the book focuses on a specific experimental system the model equations are as simple as possible so that the discussed methods should be adaptable to a large class of systems showing particle-like structures. Therefore, this book should attract not only the experienced scientist, who is interested in self-organization phenomena, but also the student, who would like to understand the investigation of a complex system on the basis of a continuous description.


Pattern Formations and Oscillatory Phenomena

Pattern Formations and Oscillatory Phenomena
Author: Shuichi Kinoshita
Publisher: Elsevier Inc. Chapters
Total Pages: 75
Release: 2013-05-09
Genre: Medical
ISBN: 0128061561

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We present examples of familiar phenomena found in nonequilibrium systems, including oscillatory phenomena, order-formation processes, and pattern formation. In particular, we introduce commonly used mathematical methods to analyze their characteristics. First, we present oscillations described by the Lotka–Volterra and van der Pol equations, the Brusselator, the Oregonator, and relaxation oscillations as examples of oscillatory phenomena. Second, we investigate the order-formation process in colloidal crystals and present an experimental observation of 2D array formation. Third, we demonstrate pattern formation in crystals on the basis of the Mullins–Sekerka instability, and in chemical and biological systems on the basis of the Turing instability. In particular, we describe the optical properties and development of sophisticated structural patterns that directly interact with light. Finally, we briefly describe a theoretical phase-transition analogy that might clarify the concept of order formation in nonequilibrium systems.


Growth and Form of Self-organized Branched Crystal Pattern in Nonlinear Chemical System

Growth and Form of Self-organized Branched Crystal Pattern in Nonlinear Chemical System
Author: Rohit Srivastava
Publisher: Springer
Total Pages: 79
Release: 2016-04-12
Genre: Science
ISBN: 9811008647

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The book introduces the oscillatory reaction and pattern formation in the Belousov-Zhabotinsky (BZ) reaction that became model for investigating a wide range of intriguing pattern formations in chemical systems. So many modifications in classic version of BZ reaction have been carried out in various experimental conditions that demonstrate rich varieties of temporal oscillations and spatio-temporal patterns in non- equilibrium conditions. Mixed-mode versions of BZ reactions, which comprise a pair of organic substrates or dual metal catalysts, have displayed very complex oscillating behaviours and novel space-time patterns during reaction processes. These characteristic spatio-temporal properties of BZ reactions have attracted increasing attention of the scientific community in recent years because of its comparable periodic structures in electrochemical systems, polymerization processes, and non-equilibrium crystallization phenomena. Instead, non-equilibrium crystallization phenomena which lead to development of novel crystal morphologies in constraint of thermodynamic equilibrium conditions have been investigated and are said to be stationary periodic structures. Efforts have continued to analyze insight mechanisms and roles of reaction-diffusion mechanism and self-organization in the growth of such periodic crystal patterns. In this book, non-equilibrium crystallization phenomena, leading to growth of some novel crystal patterns in dual organic substrate modes of oscillatory BZ reactions have been discussed. Efforts have been made to find out experimental parameters where transitions of the spherulitic crystal patterns take place. The book provides the scientific community and entrepreneurs with a thorough understanding and knowledge of the growth and form of branched crystal pattern in reaction-diffusion system and their morphological transition.


Spatio-Temporal Pattern Formation

Spatio-Temporal Pattern Formation
Author: Daniel Walgraef
Publisher: Springer Science & Business Media
Total Pages: 310
Release: 2012-12-06
Genre: Science
ISBN: 1461218500

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Spatio-temporal patterns appear almost everywhere in nature, and their description and understanding still raise important and basic questions. However, if one looks back 20 or 30 years, definite progress has been made in the modeling of insta bilities, analysis of the dynamics in their vicinity, pattern formation and stability, quantitative experimental and numerical analysis of patterns, and so on. Universal behaviors of complex systems close to instabilities have been determined, leading to the wide interdisciplinarity of a field that is now referred to as nonlinear science or science of complexity, and in which initial concepts of dissipative structures or synergetics are deeply rooted. In pioneering domains related to hydrodynamics or chemical instabilities, the interactions between experimentalists and theoreticians, sometimes on a daily basis, have been a key to progress. Everyone in the field praises the role played by the interactions and permanent feedbacks between ex perimental, numerical, and analytical studies in the achievements obtained during these years. Many aspects of convective patterns in normal fluids, binary mixtures or liquid crystals are now understood and described in this framework. The generic pres ence of defects in extended systems is now well established and has induced new developments in the physics of laser with large Fresnel numbers. Last but not least, almost 40 years after his celebrated paper, Turing structures have finally been ob tained in real-life chemical reactors, triggering anew intense activity in the field of reaction-diffusion systems.


Patterns and Interfaces in Dissipative Dynamics

Patterns and Interfaces in Dissipative Dynamics
Author: L.M. Pismen
Publisher: Springer Science & Business Media
Total Pages: 383
Release: 2006-07-07
Genre: Science
ISBN: 3540304312

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Spontaneous pattern formation in nonlinear dissipative systems far from equilibrium occurs in a variety of settings in nature and technology, and has applications ranging from nonlinear optics through solid and fluid mechanics, physical chemistry and chemical engineering to biology. This book explores the forefront of current research, describing in-depth the analytical methods that elucidate the complex evolution of nonlinear dissipative systems.


Pattern Formations and Oscillatory Phenomena

Pattern Formations and Oscillatory Phenomena
Author: Jun Miyazaki
Publisher: Elsevier Inc. Chapters
Total Pages: 34
Release: 2013-05-09
Genre: Medical
ISBN: 012806157X

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In this chapter, temporal and spatial patterns observed in the Belousov–Zhabotinsky (BZ) reaction are described, which is a typical nonlinear chemical reaction system that exhibits oscillation and wave propagation. Some related phenomena in biological systems are presented. The underlying mechanism and modeling of oscillation based on chemical equations are then introduced. Reaction diffusion equations are derived and numerical simulations are performed based on the model to explain how the dynamical pattern appears. Finally, synchronous phenomena observed in the BZ reaction are described with an analytical method based on the phase model.


An Introduction to Nonlinear Chemical Dynamics

An Introduction to Nonlinear Chemical Dynamics
Author: Irving R. Epstein
Publisher: Oxford University Press
Total Pages: 407
Release: 1998-10-22
Genre: Science
ISBN: 0195096703

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Assuming no more than an undergraduate knowledge of chemistry, the authors take the reader through the necessary mathematical and theoretical background of oscillating reactions, chaos and chemical waves to advanced topics of current research interest in chemical systems.