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DNA barcoding: a practical tool for fundamental and applied biodiversity research

DNA barcoding: a practical tool for fundamental and applied biodiversity research
Author: Zoltan T Nagy
Publisher: PenSoft Publishers LTD
Total Pages: 419
Release: 2013-12-30
Genre: Science
ISBN: 9546427101

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DNA barcoding has become a well-accepted and popular tool for the identification of species and the detection of cryptic taxonomic diversity. As such, it has a tremendous potential for a wide variety of applications in taxonomy, agronomy, conservation biology, forensics etc. Therefore, several countries, institutions and organizations have launched DNA barcoding projects in the context of the international ?Consortium for the Barcode of Life? (CBOL) initiative. Also Belgium has done so with the establishment of the FWO research community ?Belgian Network for DNA barcoding?. In 2012, this network organized the ?Third European Conference for the Barcode of Life? (ECBOL3) in Brussels. During this event a call was made to publish a collection of papers under the thematic title ?DNA barcoding: a practical tool for fundamental and applied biodiversity research?. With the financial support of the EC project ?ViBRANT? (Virtual Biodiversity Research and Access Network for Taxonomy), 21 papers were bundled to form this special ?ZooKeys? issue with the aim to present various applications, advantages and limitations of DNA barcoding. Hence, it is the editors? hope that this issue provides a modest, but timely, contribution to the already vast literature on DNA barcoding.


DNA Barcodes for Evolution and Biodiversity

DNA Barcodes for Evolution and Biodiversity
Author: Stephan Koblmüller
Publisher:
Total Pages: 0
Release: 2024-03-21
Genre: Science
ISBN: 9783725804870

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The world is currently facing an unprecedented loss of biodiversity. To document, maintain, and monitor changes in biodiversity, it is necessary to identify which entities contribute to biodiversity. For many taxa, reliable species identification, the prerequisite for studying biodiversity, is only possible by taxonomic experts, whose numbers have been drastically declining over the last few decades. DNA barcoding is a method for identifying specimens (ideally at the species level) by employing an expert-based reference system (open-access database) that drastically increases the number of people able to identify organisms down to the species level and reduces the rate of misidentifications among morphologically similar taxa. Specifically, DNA barcoding is a standardized approach for identifying organisms based on specific sections of their DNA. Depending on the taxonomic group, different genes have been established as the standard DNA barcoding markers even though, for certain applications or taxa, other genes might be used as well. Consequently, DNA barcodes should allow for (in most cases) unambiguous specimen identification once reliable DNA barcode reference data are available and thus are an important tool in basic and applied biodiversity and evolutionary biology research. This reprint includes a collection of studies that use DNA barcoding (incl. metabarcoding, eDNA, etc.) to answer questions in basic and applied biodiversity and evolutionary biology research. Many of the key aspects of DNA barcoding are addressed by these studies, which provide some important new insights in their respective fields of research.


DNA Barcoding in Marine Perspectives

DNA Barcoding in Marine Perspectives
Author: Subrata Trivedi
Publisher: Springer
Total Pages: 325
Release: 2016-08-31
Genre: Science
ISBN: 3319418408

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More than two third of the surface area of our planet is covered by oceans and assessment of the marine biodiversity is a challenging task. With the increasing global population, there is a tendency to exploit marine recourses for food, energy and other requirements. This puts pressure on the fragile marine environment and needs sustainable conservation efforts. Marine species identification using traditional taxonomical methods are often burdened with taxonomic controversies. Here in this book we will discuss the comparatively new concept of DNA barcoding and its significance in marine perspective. This molecular technique can be helpful in the assessment of cryptic species which are widespread in marine environment, and can also be used to link the different life cycle stages to the adult which is difficult to accomplish in marine ecosystems. Other advantages of DNA barcoding include authentication and safety assessment of seafood, wildlife forensics, conservation genetics and detection of invasive alien species (IAS). Global DNA barcoding efforts in the marine habitat include MarBOL, CeDAMar, CMarZ, SHARK-BOL, etc. DNA barcoding of different marine groups ranging from the microbes to mammals is to be revealed. In conjugation with newer and faster techniques like high throughput sequencing, DNA barcoding is serving as an effective modern tool in marine biodiversity assessment and conservation.


DNA Barcoding and Molecular Phylogeny

DNA Barcoding and Molecular Phylogeny
Author: Subrata Trivedi
Publisher: Springer Nature
Total Pages: 259
Release: 2020-08-24
Genre: Science
ISBN: 3030500756

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This book presents a comprehensive overview of DNA barcoding and molecular phylogeny, along with a number of case studies. It discusses a number of areas where DNA barcoding can be applied, such as clinical microbiology, especially in relation to infection management; DNA database management; and plant -animal interactions, and also presents valuable information on the DNA barcoding and molecular phylogeny of microbes, algae, elasmobranchs, fishes, birds and ruminant mammals. Furthermore it features unique case studies describing DNA barcoding of reptiles dwelling in Saudi Arabian deserts, genetic variation studies in both wild and hatchery populations of Anabas testudineus, DNA barcoding and molecular phylogeny of Ichthyoplankton and juvenile fishes of Kuantan River in Malaysia, and barcoding and molecular phylogenetic analysis of indigenous bacteria from fishes dwelling in a tropical tidal river. Moreover, since prompt identification and management of invasive species is vital to prevent economic and ecological loss, the book includes a chapter on DNA barcoding of invasive species. Given its scope, this book will appeal not only to researchers, teachers and students around the globe, but also to general readers.


Plant Biodiversity

Plant Biodiversity
Author: Abid A Ansari
Publisher: CABI
Total Pages: 630
Release: 2016-12-23
Genre: Nature
ISBN: 1780646941

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Results of regular monitoring of the species diversity and structure of plant communities is used by conservation biologists to help understand impacts of perturbations caused by humans and other environmental factors on ecosystems worldwide. Changes in plant communities can, for example, be a reflection of increased levels of pollution, a response to long-term climate change, or the result of shifts in land-use practices by the human population. This book presents a series of essays on the application of plant biodiversity monitoring and assessment to help prevent species extinction, ecosystem collapse, and solve problems in biodiversity conservation. It has been written by a large international team of researchers and uses case studies and examples from all over the world, and from a broad range of terrestrial and aquatic ecosystems. The book is aimed at any graduate students and researchers with a strong interest in plant biodiversity monitoring and assessment, plant community ecology, biodiversity conservation, and the environmental impacts of human activities on ecosystems.


Innovations in Computational Intelligence

Innovations in Computational Intelligence
Author: Brajendra Panda
Publisher: Springer
Total Pages: 309
Release: 2017-11-02
Genre: Technology & Engineering
ISBN: 9811045550

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The present book includes a set of selected best papers from the 3rd International Conference on Recent Developments in Science, Engineering and Technology (REDSET 2016), held in Gurgaon, India, from 21 to 22 October 2016. The conference focused on the experimental, theoretical and application aspects of innovations in computational intelligence and provided a platform for the academicians and scientists. This book provides an insight into ongoing research and future directions in this novel, continuously evolving field. Many decades have been devoted to creating and refining methods and tools for computational intelligence such as Artificial Neural Networks, Evolutionary Computation, Fuzzy Logic, Computational Swarm Intelligence and Artificial Immune Systems. However, their applications have not yet been broadly disseminated. Computational intelligence can be used to provide solutions to many real-life problems, which could be translated into binary languages, allowing computers to process them. These problems, which involve various fields such as robotics, bioinformatics, computational biology, gene expression, cancer classification, protein function prediction, etc., could potentially be solved using computational intelligence techniques.


Introduction to Access and Benefit-Sharing and the Nagoya Protocol: What DNA Barcoding Researchers Need to Know

Introduction to Access and Benefit-Sharing and the Nagoya Protocol: What DNA Barcoding Researchers Need to Know
Author: Alex Borisenko
Publisher:
Total Pages: 40
Release: 2017
Genre: Biology (General)
ISBN: 9789546429056

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The Global Taxonomy Initiative has provided training opportunities for Parties to apply DNA-sequence based species identification method as a tool for biodiversity management that requires rapid species identification. The method of DNA barcoding has invigorated taxonomic research and is now applied in a wide range of areas, including environmental assessment, food inspection, disease control and public education. DNA barcoding has proven to be a powerful tool for both taxonomists and all biodiversity stakeholders, including women and children, and indigenous peoples and local communities. On the other hand, DNA barcoding practices have raised concerns among the public. These concerns include expatriation of biological specimens, sharing of digital sequence information and associated data with potential value, risks of unapproved changes of research purpose or benefits to be shared. This e-book provides practical advice on international collaborations that comply with the Nagoya Protocol and relevant national laws and regulations.


Environmental DNA

Environmental DNA
Author: Pierre Taberlet
Publisher: Oxford University Press
Total Pages: 272
Release: 2018-02-02
Genre: Science
ISBN: 0191079995

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Environmental DNA (eDNA) refers to DNA that can be extracted from environmental samples (such as soil, water, feces, or air) without the prior isolation of any target organism. The analysis of environmental DNA has the potential of providing high-throughput information on taxa and functional genes in a given environment, and is easily amenable to the study of both aquatic and terrestrial ecosystems. It can provide an understanding of past or present biological communities as well as their trophic relationships, and can thus offer useful insights into ecosystem functioning. There is now a rapidly-growing interest amongst biologists in applying analysis of environmental DNA to their own research. However, good practices and protocols dealing with environmental DNA are currently widely dispersed across numerous papers, with many of them presenting only preliminary results and using a diversity of methods. In this context, the principal objective of this practical handbook is to provide biologists (both students and researchers) with the scientific background necessary to assist with the understanding and implementation of best practices and analyses based on environmental DNA.


DNA Barcoding

DNA Barcoding
Author: Robert DeSalle
Publisher: Springer Nature
Total Pages: 577
Release:
Genre:
ISBN: 1071635816

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