Codon Evolution PDF Download
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Author | : Gina M. Cannarozzi |
Publisher | : Oxford University Press |
Total Pages | : 297 |
Release | : 2012-02-23 |
Genre | : Mathematics |
ISBN | : 019960116X |
Download Codon Evolution Book in PDF, ePub and Kindle
The second part of the book focuses on codon usage bias.
Author | : Gina M. Cannarozzi |
Publisher | : Oxford University Press |
Total Pages | : |
Release | : 2012-02-23 |
Genre | : Science |
ISBN | : 0191624179 |
Download Codon Evolution Book in PDF, ePub and Kindle
Codon-based models of evolution are a relatively new addition to the toolkit of computational biologists, and in recent years remarkable progress has been made in this area. The study of evolution at the codon level captures information contained in both amino acid and synonymous DNA substitutions. By combining these two types of information, codon analyses are more powerful than those of either amino acid or DNA evolution alone. This is a clear benefit for most evolutionary analyses, including phylogenetic reconstruction, detection of selection, ancestral sequence reconstruction, and alignment of coding DNA. Despite the theoretical advantages of codon based models, their relative complexity delayed their widespread use. Only in recent years, when large-scale sequencing projects produced sufficient genomic data and computational power increased, did their usage become more common. In Codon Evolution, leading researchers in the field of molecular evolution provide the latest insights from codon-based analyses of genetic sequences. The first part of the book provides comprehensive coverage of the developments of various types of codon substitution models such as parametric and empirical models used in maximum likelihood as well as Bayesian frameworks. Subsequent chapters examine the use of codon models to infer selection and other applications of codon models to biological systems. The second part of the book focuses on codon usage bias. Both the underlying mechanisms as well as current methods to analyse codon usage bias are presented.
Author | : Shōzō Ōsawa |
Publisher | : |
Total Pages | : 240 |
Release | : 1995 |
Genre | : Science |
ISBN | : |
Download Evolution of the Genetic Code Book in PDF, ePub and Kindle
The genetic code was deciphered experimentally around 1966 and for a number of years scientists considered it to be "universal" for all forms of life. In 1981 researchers shocked the scientific community with the discovery that the code differed in mitochondria and certain other organisms, evidence that the genetic code was still evolving. This book discusses the distribution and origin of the non-universal codes and examines the possible mechanisms of code changes, making it essential reading for all those interested in evolutionary genetics.
Author | : Xuhua Xia |
Publisher | : Springer Science & Business Media |
Total Pages | : 284 |
Release | : 2007-05-08 |
Genre | : Science |
ISBN | : 030646893X |
Download Data Analysis in Molecular Biology and Evolution Book in PDF, ePub and Kindle
Data Analysis in Molecular Biology and Evolution introduces biologists to DAMBE, a proprietary, user-friendly computer program for molecular data analysis. The unique combination of this book and software will allow biologists not only to understand the rationale behind a variety of computational tools in molecular biology and evolution, but also to gain instant access to these tools for use in their laboratories. Data Analysis in Molecular Biology and Evolution serves as an excellent resource for advanced level undergraduates or graduates as well as for professionals working in the field.
Author | : Koji Tamura |
Publisher | : MDPI |
Total Pages | : 203 |
Release | : 2018-03-23 |
Genre | : Electronic book |
ISBN | : 3038427691 |
Download The Origin and Evolution of the Genetic Code: 100th Anniversary Year of the Birth of Francis Crick Book in PDF, ePub and Kindle
This book is a printed edition of the Special Issue "The Origin and Evolution of the Genetic Code: 100th Anniversary Year of the Birth of Francis Crick" that was published in Life
Author | : Roderick D.M. Page |
Publisher | : John Wiley & Sons |
Total Pages | : 352 |
Release | : 2009-07-14 |
Genre | : Science |
ISBN | : 1444313363 |
Download Molecular Evolution Book in PDF, ePub and Kindle
The study of evolution at the molecular level has given the subject of evolutionary biology a new significance. Phylogenetic 'trees' of gene sequences are a powerful tool for recovering evolutionary relationships among species, and can be used to answer a broad range of evolutionary and ecological questions. They are also beginning to permeate the medical sciences. In this book, the authors approach the study of molecular evolution with the phylogenetic tree as a central metaphor. This will equip students and professionals with the ability to see both the evolutionary relevance of molecular data, and the significance evolutionary theory has for molecular studies. The book is accessible yet sufficiently detailed and explicit so that the student can learn the mechanics of the procedures discussed. The book is intended for senior undergraduate and graduate students taking courses in molecular evolution/phylogenetic reconstruction. It will also be a useful supplement for students taking wider courses in evolution, as well as a valuable resource for professionals. First student textbook of phylogenetic reconstruction which uses the tree as a central metaphor of evolution. Chapter summaries and annotated suggestions for further reading. Worked examples facilitate understanding of some of the more complex issues. Emphasis on clarity and accessibility.
Author | : Bruce Alberts |
Publisher | : |
Total Pages | : 0 |
Release | : 2002 |
Genre | : Cytology |
ISBN | : 9780815332183 |
Download Molecular Biology of The Cell Book in PDF, ePub and Kindle
Author | : Max K. Hecht |
Publisher | : Springer Science & Business Media |
Total Pages | : 250 |
Release | : 2000-01-31 |
Genre | : Science |
ISBN | : 9780306461781 |
Download Evolutionary Biology Book in PDF, ePub and Kindle
After volume 33, this book series was replaced by the journal "Evolutionary Biology." Please visit www.springer.com/11692 for further information. This volume continues bringing to readers the findings of eminent evolutionary biologists and paleobiologists. Among the topics discussed in this book are the origin of the dermal skeleton in conodont chordates, patterns of nucleotide substitution and codon usage in plasmid DNA evolution, a model to explain phenotype stability in functional systems, and inter-island speciation of Hawaiian biota.
Author | : Eugene V. Koonin |
Publisher | : Springer Science & Business Media |
Total Pages | : 482 |
Release | : 2013-06-29 |
Genre | : Science |
ISBN | : 1475737831 |
Download Sequence — Evolution — Function Book in PDF, ePub and Kindle
Sequence - Evolution - Function is an introduction to the computational approaches that play a critical role in the emerging new branch of biology known as functional genomics. The book provides the reader with an understanding of the principles and approaches of functional genomics and of the potential and limitations of computational and experimental approaches to genome analysis. Sequence - Evolution - Function should help bridge the "digital divide" between biologists and computer scientists, allowing biologists to better grasp the peculiarities of the emerging field of Genome Biology and to learn how to benefit from the enormous amount of sequence data available in the public databases. The book is non-technical with respect to the computer methods for genome analysis and discusses these methods from the user's viewpoint, without addressing mathematical and algorithmic details. Prior practical familiarity with the basic methods for sequence analysis is a major advantage, but a reader without such experience will be able to use the book as an introduction to these methods. This book is perfect for introductory level courses in computational methods for comparative and functional genomics.
Author | : Ziheng Yang |
Publisher | : Oxford University Press, USA |
Total Pages | : 374 |
Release | : 2006-10-05 |
Genre | : Medical |
ISBN | : 0198566999 |
Download Computational Molecular Evolution Book in PDF, ePub and Kindle
This book describes the models, methods and algorithms that are most useful for analysing the ever-increasing supply of molecular sequence data, with a view to furthering our understanding of the evolution of genes and genomes.