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Calibrated Bayes Factor and Bayesian Model Averaging

Calibrated Bayes Factor and Bayesian Model Averaging
Author: Jiayin Zheng
Publisher:
Total Pages: 150
Release: 2018
Genre: Bayesian statistical decision theory
ISBN:

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There is a rich history of work on model selection and averaging in the statistics literature. The Bayesian paradigm provides an approach to model selection which successfully overcomes the drawbacks for which frequentist hypothesis testing has been criticized. Most commonly, Bayesian model selection methods are based on the Bayes factor. Additionally, the Bayes factor has applications outside the realm of model selection, such as model averaging. In a formal sense, as a supplement to the prior odds, the Bayes factor produces the posterior odds for a pair of models. These posterior odds can be translated to posterior probabilities and yields a full posterior distribution that assigns a probability to each model as well as a distribution over the parameters for each model. Then the Bayesian model averaging provides better prediction by making inferences based on a weighted average over all of the models considered.


Limited Information Bayesian Model Averaging for Dynamic Panels with Short Time Periods

Limited Information Bayesian Model Averaging for Dynamic Panels with Short Time Periods
Author: Alin Mirestean
Publisher: International Monetary Fund
Total Pages: 48
Release: 2009-04
Genre: Business & Economics
ISBN:

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Bayesian Model Averaging (BMA) provides a coherent mechanism to address the problem of model uncertainty. In this paper we extend the BMA framework to panel data models where the lagged dependent variable as well as endogenous variables appear as regressors. We propose a Limited Information Bayesian Model Averaging (LIBMA) methodology and then test it using simulated data. Simulation results suggest that asymptotically our methodology performs well both in Bayesian model selection and averaging. In particular, LIBMA recovers the data generating process very well, with high posterior inclusion probabilities for all the relevant regressors, and parameter estimates very close to the true values. These findings suggest that our methodology is well suited for inference in dynamic panel data models with short time periods in the presence of endogenous regressors under model uncertainty.


Learning Statistics with R

Learning Statistics with R
Author: Daniel Navarro
Publisher: Lulu.com
Total Pages: 617
Release: 2013-01-13
Genre: Computers
ISBN: 1326189727

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"Learning Statistics with R" covers the contents of an introductory statistics class, as typically taught to undergraduate psychology students, focusing on the use of the R statistical software and adopting a light, conversational style throughout. The book discusses how to get started in R, and gives an introduction to data manipulation and writing scripts. From a statistical perspective, the book discusses descriptive statistics and graphing first, followed by chapters on probability theory, sampling and estimation, and null hypothesis testing. After introducing the theory, the book covers the analysis of contingency tables, t-tests, ANOVAs and regression. Bayesian statistics are covered at the end of the book. For more information (and the opportunity to check the book out before you buy!) visit http://ua.edu.au/ccs/teaching/lsr or http://learningstatisticswithr.com


Bayesian Model Selection and Statistical Modeling

Bayesian Model Selection and Statistical Modeling
Author: Tomohiro Ando
Publisher: CRC Press
Total Pages: 300
Release: 2019-08-30
Genre:
ISBN: 9780367383978

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Ando shows how to implement a variety of Bayesian inference using R and sampling methods, such as Markov chain Monte Carlo. He covers the different types of simulation-based Bayesian model selection criteria, including the numerical calculation of Bayes factors.


Statistical Rethinking

Statistical Rethinking
Author: Richard McElreath
Publisher: CRC Press
Total Pages: 488
Release: 2018-01-03
Genre: Mathematics
ISBN: 1315362619

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Statistical Rethinking: A Bayesian Course with Examples in R and Stan builds readers’ knowledge of and confidence in statistical modeling. Reflecting the need for even minor programming in today’s model-based statistics, the book pushes readers to perform step-by-step calculations that are usually automated. This unique computational approach ensures that readers understand enough of the details to make reasonable choices and interpretations in their own modeling work. The text presents generalized linear multilevel models from a Bayesian perspective, relying on a simple logical interpretation of Bayesian probability and maximum entropy. It covers from the basics of regression to multilevel models. The author also discusses measurement error, missing data, and Gaussian process models for spatial and network autocorrelation. By using complete R code examples throughout, this book provides a practical foundation for performing statistical inference. Designed for both PhD students and seasoned professionals in the natural and social sciences, it prepares them for more advanced or specialized statistical modeling. Web Resource The book is accompanied by an R package (rethinking) that is available on the author’s website and GitHub. The two core functions (map and map2stan) of this package allow a variety of statistical models to be constructed from standard model formulas.


Using Bayesian Model Averaging to Calibrate Forecast Ensembles

Using Bayesian Model Averaging to Calibrate Forecast Ensembles
Author:
Publisher:
Total Pages: 33
Release: 2003
Genre:
ISBN:

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Ensembles used for probabilistic weather forecasting often exhibit a spread-skill relationship, but they tend to be underdispersive. This paper proposes a principled statistical method for postprocessing ensembles based on Bayesian model averaging (BMA), which is a standard method for combining predictive distributions from different sources. The BMA predictive probability density function (PDF) of any quantity of interest is a weighted average of PDFs centered around the individual (possibly bias-corrected) forecasts, where the weights are equal to posterior probabilities of the models generating the forecasts, and reflect the models' skill over the training period. The BMA PDF can be represented as an unweighted ensemble of any desired size, by simulating from the BMA predictive distribution. The BMA weights can be used to assess the usefulness of ensemble members, and this can be used as a basis for selecting ensemble members. The BMA predictive variance can be decomposed into two components, one corresponding to the between-forecast variability, and the second to the within-forecast variability. Predictive PDFs or intervals based solely on the ensemble spread incorporate the first component but not the second. Thus BMA provides a theoretical explanation of the tendency of ensembles to exhibit a spread-skill relationship but yet to be underdispersive. The method was applied to 48-hour forecasts of sea-level pressure in the Pacific Northwest, using the University of Washington MM5 mesoscale ensemble. The predictive PDFs were much better calibrated than the raw ensemble, the BMA forecasts were sharp in that 90% BMA prediction intervals were 62% shorter on average than those produced by sample climatology. As a byproduct, BMA yields a deterministic point forecast, and this had RMSE 11% lower than any of the ensemble members, and 6% lower than the ensemble mean. Similar results were obtained for forecasts of surface temperature.


Bayesian Methods for Data Analysis, Third Edition

Bayesian Methods for Data Analysis, Third Edition
Author: Bradley P. Carlin
Publisher: CRC Press
Total Pages: 552
Release: 2008-06-30
Genre: Mathematics
ISBN: 9781584886983

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Broadening its scope to nonstatisticians, Bayesian Methods for Data Analysis, Third Edition provides an accessible introduction to the foundations and applications of Bayesian analysis. Along with a complete reorganization of the material, this edition concentrates more on hierarchical Bayesian modeling as implemented via Markov chain Monte Carlo (MCMC) methods and related data analytic techniques. New to the Third Edition New data examples, corresponding R and WinBUGS code, and homework problems Explicit descriptions and illustrations of hierarchical modeling—now commonplace in Bayesian data analysis A new chapter on Bayesian design that emphasizes Bayesian clinical trials A completely revised and expanded section on ranking and histogram estimation A new case study on infectious disease modeling and the 1918 flu epidemic A solutions manual for qualifying instructors that contains solutions, computer code, and associated output for every homework problem—available both electronically and in print Ideal for Anyone Performing Statistical Analyses Focusing on applications from biostatistics, epidemiology, and medicine, this text builds on the popularity of its predecessors by making it suitable for even more practitioners and students.


Frontiers of Statistical Decision Making and Bayesian Analysis

Frontiers of Statistical Decision Making and Bayesian Analysis
Author: Ming-Hui Chen
Publisher: Springer Science & Business Media
Total Pages: 631
Release: 2010-07-24
Genre: Mathematics
ISBN: 1441969446

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Research in Bayesian analysis and statistical decision theory is rapidly expanding and diversifying, making it increasingly more difficult for any single researcher to stay up to date on all current research frontiers. This book provides a review of current research challenges and opportunities. While the book can not exhaustively cover all current research areas, it does include some exemplary discussion of most research frontiers. Topics include objective Bayesian inference, shrinkage estimation and other decision based estimation, model selection and testing, nonparametric Bayes, the interface of Bayesian and frequentist inference, data mining and machine learning, methods for categorical and spatio-temporal data analysis and posterior simulation methods. Several major application areas are covered: computer models, Bayesian clinical trial design, epidemiology, phylogenetics, bioinformatics, climate modeling and applications in political science, finance and marketing. As a review of current research in Bayesian analysis the book presents a balance between theory and applications. The lack of a clear demarcation between theoretical and applied research is a reflection of the highly interdisciplinary and often applied nature of research in Bayesian statistics. The book is intended as an update for researchers in Bayesian statistics, including non-statisticians who make use of Bayesian inference to address substantive research questions in other fields. It would also be useful for graduate students and research scholars in statistics or biostatistics who wish to acquaint themselves with current research frontiers.


Bayesian Reasoning in Data Analysis

Bayesian Reasoning in Data Analysis
Author: Giulio D'Agostini
Publisher: World Scientific
Total Pages: 351
Release: 2003
Genre: Mathematics
ISBN: 9812383565

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A multi-level introduction to Bayesian reasoning. The basic ideas of this approach to the quantification of uncertainty are presented using examples from research and everyday life. Applications covered include: parametric inference; combination of results; comparison of hypotheses; and more.


Bayesian Methods

Bayesian Methods
Author: Jeff Gill
Publisher: CRC Press
Total Pages: 696
Release: 2007-11-26
Genre: Mathematics
ISBN: 1420010824

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The first edition of Bayesian Methods: A Social and Behavioral Sciences Approach helped pave the way for Bayesian approaches to become more prominent in social science methodology. While the focus remains on practical modeling and basic theory as well as on intuitive explanations and derivations without skipping steps, this second edition incorpora