Basics In Perl And Bioperl PDF Download
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Author | : Kaladhar DSVGK |
Publisher | : GRIN Verlag |
Total Pages | : 76 |
Release | : 2014-02-10 |
Genre | : Medical |
ISBN | : 365659175X |
Download Basics in PERL and BioPERL Book in PDF, ePub and Kindle
Document from the year 2014 in the subject Computer Science - Bioinformatics, , language: English, abstract: PERL and BioPERL are the programming languages that are very important for Biological researchers who are working in computational biology. The programs provide the basic knowledge in both theory and practical applications. The introduction provides the basics on these programming languages and the execution in windows.
Author | : James Tisdall |
Publisher | : "O'Reilly Media, Inc." |
Total Pages | : 399 |
Release | : 2003-09-25 |
Genre | : Computers |
ISBN | : 1449390900 |
Download Mastering Perl for Bioinformatics Book in PDF, ePub and Kindle
Historically, programming hasn't been considered a critical skill for biologists. But now, with access to vast amounts of biological data contained in public databases, programming skills are increasingly in strong demand in biology research and development. Perl, with its highly developed capacities in string handling, text processing, networking, and rapid prototyping, has emerged as the programming language of choice for biological data analysis.Mastering Perl for Bioinformatics covers the core Perl language and many of its module extensions, presenting them in the context of biological data and problems of pressing interest to the biological community. This book, along with Beginning Perl for Bioinformatics, forms a basic course in Perl programming. This second volume finishes the basic Perl tutorial material (references, complex data structures, object-oriented programming, use of modules--all presented in a biological context) and presents some advanced topics of considerable interest in bioinformatics.The range of topics covered in Mastering Perl for Bioinformatics prepares the reader for enduring and emerging developments in critical areas of bioinformatics programming such as: Gene finding String alignment Methods of data storage and retrieval (SML and databases) Modeling of networks (graphs and Petri nets) Graphics (Tk) Parallelization Interfacing with other programming languages Statistics (PDL) Protein structure determination Biological models of computation (DNA Computers) Biologists and computer scientists who have conquered the basics of Perl and are ready to move even further in their mastery of this versatile language will appreciate the author's well-balanced approach to applying Perl's analytical abilities to the field of bioinformatics. Full of practical examples and real-world biological problem solving, this book is a must for any reader wanting to move beyond beginner level Perl in bioinformatics.
Author | : James Tisdall |
Publisher | : "O'Reilly Media, Inc." |
Total Pages | : 388 |
Release | : 2001-10-22 |
Genre | : Computers |
ISBN | : 0596550472 |
Download Beginning Perl for Bioinformatics Book in PDF, ePub and Kindle
With its highly developed capacity to detect patterns in data, Perl has become one of the most popular languages for biological data analysis. But if you're a biologist with little or no programming experience, starting out in Perl can be a challenge. Many biologists have a difficult time learning how to apply the language to bioinformatics. The most popular Perl programming books are often too theoretical and too focused on computer science for a non-programming biologist who needs to solve very specific problems.Beginning Perl for Bioinformatics is designed to get you quickly over the Perl language barrier by approaching programming as an important new laboratory skill, revealing Perl programs and techniques that are immediately useful in the lab. Each chapter focuses on solving a particular bioinformatics problem or class of problems, starting with the simplest and increasing in complexity as the book progresses. Each chapter includes programming exercises and teaches bioinformatics by showing and modifying programs that deal with various kinds of practical biological problems. By the end of the book you'll have a solid understanding of Perl basics, a collection of programs for such tasks as parsing BLAST and GenBank, and the skills to take on more advanced bioinformatics programming. Some of the later chapters focus in greater detail on specific bioinformatics topics. This book is suitable for use as a classroom textbook, for self-study, and as a reference.The book covers: Programming basics and working with DNA sequences and strings Debugging your code Simulating gene mutations using random number generators Regular expressions and finding motifs in data Arrays, hashes, and relational databases Regular expressions and restriction maps Using Perl to parse PDB records, annotations in GenBank, and BLAST output
Author | : Michael Moorhouse |
Publisher | : John Wiley & Sons |
Total Pages | : 506 |
Release | : 2005-09-27 |
Genre | : Medical |
ISBN | : 0470026456 |
Download Bioinformatics Biocomputing and Perl Book in PDF, ePub and Kindle
Bioinformatics, Biocomputing and Perl presents a modern introduction to bioinformatics computing skills and practice. Structuring its presentation around four main areas of study, this book covers the skills vital to the day-to-day activities of today’s bioinformatician. Each chapter contains a series of maxims designed to highlight key points and there are exercises to supplement and cement the introduced material. Working with Perl presents an extended tutorial introduction to programming through Perl, the premier programming technology of the bioinformatics community. Even though no previous programming experience is assumed, completing the tutorial equips the reader with the ability to produce powerful custom programs with ease. Working with Data applies the programming skills acquired to processing a variety of bioinformatics data. In addition to advice on working with important data stores such as the Protein DataBank, SWISS-PROT, EMBL and the GenBank, considerable discussion is devoted to using bioinformatics data to populate relational database systems. The popular MySQL database is used in all examples. Working with the Web presents a discussion of the Web-based technologies that allow the bioinformatics researcher to publish both data and applications on the Internet. Working with Applications shifts gear from creating custom programs to using them. The tools described include Clustal-W, EMBOSS, STRIDE, BLAST and Xmgrace. An introduction to the important Bioperl Project concludes this chapter and rounds off the book.
Author | : D. Curtis Jamison |
Publisher | : John Wiley & Sons |
Total Pages | : 204 |
Release | : 2003-11-12 |
Genre | : |
ISBN | : 9788126504725 |
Download Perl Programming For Bioinformatics & Biologists Book in PDF, ePub and Kindle
Working on the assumption that the reader has never had any formal training in programming, and using examples geared towards real problems faced by biologists, this text serves as a basic reference for teaching Perl programming. Through this text, readers will also gain code fragments that can recycle into their own programs.· An Introduction to Perl· Variables and Data Types· Arrays and Hashes· Control Structures· Subroutines· String Manipulation· Input and Output· Perl Modules and Packages· References· Object-Oriented Programming· Bioperl
Author | : Nathan Metzler |
Publisher | : Independently Published |
Total Pages | : 146 |
Release | : 2020-05-30 |
Genre | : |
ISBN | : |
Download Perl Programming for Beginners Book in PDF, ePub and Kindle
Discover how to master the Perl Programming Language and learn how to harness the amazing power of Perl to build powerful, heavy-duty web applications! Do you want to learn a robust programming language that has wide applications and will remain evergreen for a long time? Are you in search of a foolproof way to learn the core fundamentals of the Perl programming language? If your answer is yes, then keep reading... Perl is a high-level, multipurpose and dynamic programming language used for a wide variety of purposes from web development and software engineering to Linux system administration and network programming. In this guide, you're going to discover all the tools you need to become a professional Perl programmer. Among the pages of Perl Programming for Beginners, you're going to learn: Everything you need to know about the unique quirks of the Perl programming language to get started as a beginner Why Perl isn't "dead" yet and how it's more relevant now more than ever in 2020 and even beyond Step-by-step instructions to install Perl on your machine of choice, whether its Windows, Linux or Mac How to write your very first Perl script ever and execute the program on your machine of choice A crash guide to understanding the fundamental concepts of Perl Programming, from data types and variables to designing user interactions Beginner-friendly Perl Programming examples to help you master the basics of Perl programming as quickly as possible ...and tons more! Even if you're learning your very first programming language as a coding newbie or you're an experienced programmer looking to add the Perl language to your programming toolbox, this guide will help you shorten the learning curve and master the basics as quickly and effectively as possible. Scroll to the top of the page and click the "Buy Now" button to get started learning the robust Perl programming language today!
Author | : brian d foy |
Publisher | : "O'Reilly Media, Inc." |
Total Pages | : 345 |
Release | : 2007-07-16 |
Genre | : Computers |
ISBN | : 0596551479 |
Download Mastering Perl Book in PDF, ePub and Kindle
This is the third in O'Reilly's series of landmark Perl tutorials, which started with Learning Perl, the bestselling introduction that taught you the basics of Perl syntax, and Intermediate Perl, which taught you how to create re-usable Perl software. Mastering Perl pulls everything together to show you how to bend Perl to your will. It convey's Perl's special models and programming idioms. This book isn't a collection of clever tricks, but a way of thinking about Perl programming so you can integrate the real-life problems of debugging, maintenance, configuration, and other tasks you encounter as a working programmer. The book explains how to: Use advanced regular expressions, including global matches, lookarounds, readable regexes, and regex debugging Avoid common programing problems with secure programming techniques Profile and benchmark Perl to find out where to focus your improvements Wrangle Perl code to make it more presentable and readable See how Perl keeps track of package variables and how you can use that for some powerful tricks Define subroutines on the fly and turn the tables on normal procedural programming. Modify and jury rig modules to fix code without editing the original source Let your users configure your programs without touching the code Learn how you can detect errors Perl doesn't report, and how to tell users about them Let your Perl program talk back to you by using Log4perl Store data for later use in another program, a later run of the same program, or to send them over a network Write programs as modules to get the benefit of Perl's distribution and testing tools Appendices include "brian's Guide to Solving Any Perl Problem" to improve your troubleshooting skills, as well as suggested reading to continue your Perl education. Mastering Perl starts you on your path to becoming the person with the answers, and, failing that, the person who knows how to find the answers or discover the problem.
Author | : Herong Yang |
Publisher | : HerongYang.com |
Total Pages | : 333 |
Release | : 1995-01-01 |
Genre | : Computers |
ISBN | : |
Download Perl Tutorials - Herong's Tutorial Examples Book in PDF, ePub and Kindle
This Perl tutorial book is a collection of notes and sample codes written by the author while he was learning Perl language himself. Topics include introduction of ActivePerl; data types, variables and expressions; scalars, arrays, hash maps, and references; input/output and file systems; DBM files and MySQL access; socket communication; generating executables; XML::Simple and RPC:XML modules; LWP::UserAgent, HTTP::Request and SOAP::Lite modules; CGI, and IIS/Apache integrations. Updated in 2024 (Version v6.02) with minor updates. For latest updates and free sample chapters, visit https://www.herongyang.com/Perl.
Author | : Arun Jagota |
Publisher | : |
Total Pages | : 50 |
Release | : 2001 |
Genre | : Computers |
ISBN | : |
Download Perl for Bioinformatics Book in PDF, ePub and Kindle
Data types. Control structures. Input and output. Regular expressions. Built-in functions on strings. Subroutines. Bioinformatics scripts. The Bioperl project. Modules. Appendix: The perl debugger.
Author | : Tom Phoenix |
Publisher | : "O'Reilly Media, Inc." |
Total Pages | : 337 |
Release | : 2001-07-18 |
Genre | : Computers |
ISBN | : 0596551924 |
Download Learning Perl Book in PDF, ePub and Kindle
If you ask Perl programmers today what book they relied on most when they were learning Perl, you'll find that an overwhelming majority will name Learning Perl--also known affectionately as "the Llama." The first edition of Learning Perl appeared in 1993 and has been a bestseller ever since. Written by two of the most prominent and active members of the Perl community, this book is the quintessential tutorial for the Perl programming language.Perl began as a tool for Unix system administrators, used for countless small tasks throughout the workday. It has since blossomed into a full-featured programming language on practically every computing platform, and is used for web programming, database manipulation, XML processing, and (of course) system administration--all this while still remaining the perfect tool for the small daily tasks it was designed for. Perl is quick, fun, and eminently useful. Many people start using Perl because they need it, but they continue to use Perl because they love it.The third edition of Learning Perl has not only been updated for Perl 5.6, but has also been rewritten from the ground up to reflect the needs of programmers learning Perl today. Informed by their years of success at teaching Perl as consultants, the authors have re-engineered the book to better match the pace and scope appropriate for readers trying to get started with Perl, while retaining the detailed discussion, thorough examples, and eclectic wit for which the book is famous.This edition of the Llama includes an expanded and more gently-paced introduction to regular expressions, new exercises and solutions designed so readers can practice what they've learned while it's still fresh in their minds, and an overall reworking to bring Learning Perl into the new millennium.Perl is a language for getting your job done. Other books may teach you to program in Perl, but this book will turn you into a Perl programmer.