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Bacterial Cell Wall Homeostasis

Bacterial Cell Wall Homeostasis
Author: Hee-Jeon Hong
Publisher: Humana
Total Pages: 288
Release: 2018-05-30
Genre: Science
ISBN: 9781493981144

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This volume brings together the most widely used and important protocols currently being employed in researching and understanding bacterial cell wall homeostasis. Chapters in Bacterial Cell Wall Homeostasis cover a variety of subjects, such as: modern microscopy techniques and other biophysical methods used to characterize the subcellular structure of the bacterial cell wall; high-throughput approaches that can be used to identify all the genes and proteins that participate in the correct functioning of an organism’s cell wall; protocols for assaying individual gene products for specific cell wall functions or identify chemicals with inhibitory activity against the cell wall; and methods for analyzing the non-protein components of the cell wall and the increasing use of computational approaches for predicting and modeling cell wall related functions and processes. Written in the highly successful Methods in Molecular Biology series format, chapters include introduction to their respective topics, lists of the necessary material and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Thorough and cutting-edge, Bacterial Cell Wall Homeostasis: Methods and Protocols emphasizes the diversity of the research taking place in bacterial cell wall homeostasis, and explains how the integration of information from across multiple disciplines is going to be essential if a holistic understanding of this important process is to be obtained.


Bacterial Cell Wall Structure and Dynamics

Bacterial Cell Wall Structure and Dynamics
Author: Tobias Dörr
Publisher: Frontiers Media SA
Total Pages: 199
Release: 2019-12-27
Genre:
ISBN: 2889631524

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Bacterial cells are encased in a cell wall, which is required to maintain cell shape and to confer physical strength to the cell. The cell wall allows bacteria to cope with osmotic and environmental challenges and to secure cell integrity during all stages of bacterial growth and propagation, and thus has to be sufficiently rigid. Moreover, to accommodate growth processes, the cell wall at the same time has to be a highly dynamic structure: During cell enlargement, division, and differentiation, bacteria continuously remodel, degrade, and resynthesize their cell wall, but pivotally need to assure cell integrity during these processes. Finally, the cell wall is also adjusted according to both environmental constraints and metabolic requirements. However, how exactly this is achieved is not fully understood. The major structural component of the bacterial cell wall is peptidoglycan (PG), a mesh-like polymer of glycan chains interlinked by short-chain peptides, constituting a net-like macromolecular structure that has historically also termed murein or murein sacculus. Although the basic structure of PG is conserved among bacteria, considerable variations occur regarding cross-bridging, modifications, and attachments. Moreover, different structural arrangements of the cell envelope exist within bacteria: a thin PG layer sandwiched between an inner and outer membrane is present in Gram-negative bacteria, and a thick PG layer decorated with secondary glycopolymers including teichoic acids, is present in Gram-positive bacteria. Furthermore, even more complex envelope structures exist, such as those found in mycobacteria. Crucially, all bacteria possess a multitude of often redundant lytic enzymes, termed “autolysins”, and other cell wall modifying and synthesizing enzymes, allowing to degrade and rebuild the various structures covering the cells. However, how cell wall turnover and cell wall biosynthesis are coordinated during different stages of bacterial growth is currently unclear. The mechanisms that prevent cell lysis during these processes are also unclear. This Research Topic focuses on the dynamics of the bacterial cell wall, its modifications, and structural rearrangements during cell growth and differentiation. It pays particular attention to the turnover of PG, its breakdown and recycling, as well as the regulation of these processes. Other structures, for example, secondary polymers such as teichoic acids, which are dynamically changed during bacterial growth and differentiation, are also covered. In recent years, our view on the bacterial cell envelope has undergone a dramatic change that challenged old models of cell wall structure, biosynthesis, and turnover. This collection of articles aims to contribute to new understandings of bacterial cell wall structure and dynamics.


The Bacterial Cell Wall

The Bacterial Cell Wall
Author: Milton R. J. Salton
Publisher:
Total Pages: 320
Release: 1964
Genre: Science
ISBN:

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Bacterial Cell Wall

Bacterial Cell Wall
Author: J.-M. Ghuysen
Publisher: Elsevier
Total Pages: 580
Release: 1994-02-09
Genre: Science
ISBN: 9780080860879

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Studies of the bacterial cell wall emerged as a new field of research in the early 1950s, and has flourished in a multitude of directions. This excellent book provides an integrated collection of contributions forming a fundamental reference for researchers and of general use to teachers, advanced students in the life sciences, and all scientists in bacterial cell wall research. Chapters include topics such as: Peptidoglycan, an essential constituent of bacterial endospores; Teichoic and teichuronic acids, lipoteichoic acids, lipoglycans, neural complex polysaccharides and several specialized proteins are frequently unique wall-associated components of Gram-positive bacteria; Bacterial cells evolving signal transduction pathways; Underlying mechanisms of bacterial resistance to antibiotics.


The Bacterial Cell Wall

The Bacterial Cell Wall
Author: Guntram Seltmann
Publisher: Springer Science & Business Media
Total Pages: 296
Release: 2002-01-10
Genre: Science
ISBN: 9783540426080

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The bacterial cell wall plays an important role in the interaction between bacteria and their environment. Thus, knowledge of the cell wall structure helps us to understand the biological properties. This volume presents a comprehensive description of all main cell wall components of both gram-negative and -positive bacteria (including mycobacteria) and archaea. Surface components outside of the cell wall, i.e. capsules, S-layers, and appendices (flagellae, fimbriae, pili), are discussed and the genetic background of their chemical structures is elucidated. On the basis of the structural background, the biological properties are explained. Methodological topics are also presented and critically discussed.


Lytic Transglycosylases

Lytic Transglycosylases
Author: Anna Isabell Weaver
Publisher:
Total Pages: 0
Release: 2021
Genre:
ISBN:

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The bacterial cell wall comprises a strong, covalently closed network of peptidoglycan (PG) strands. While PG synthesis is generally essential for bacterial survival, the cell wall is also by necessity a dynamic structure and undergoes constant degradation and remodeling by "autolysins," enzymes that break bonds within PG. One class of autolysin, the lytic transglycosylases (LTGs), cleaves the glycosidic linkages within PG strands. Despite LTGs having well-described biochemical properties, LTG redundancy and diversity have stymied understanding of their fundamental physiological roles. LTGs have been mostly assigned various non-essential, or poorly defined, pleiotropic functions and so there has been no clear evidence to explain why this extreme redundancy, usually indicating an essential function, is so widely conserved amongst diverse bacteria. The diarrheal pathogen Vibrio cholerae encodes eight known LTGs and inactivating single LTGs rarely generates a significant mutant phenotype from which to infer physiological importance. Therefore, rather than directly pursuing individual LTGs, we sought to explore the collective function of the entire enzymatic class by interrogating a mutant lacking all known LTGs. In doing so, we found that V. cholerae must retain at least one active LTG for survival and subsequently characterized the first truly essential role fulfilled by LTGs : clearance of PG debris from the periplasm which accumulates during normal cell wall expansion and remodeling, or during cell wall damage. Coincidentally, this addresses a fundamental question about how bacteria maintain the integrity of a dynamic cell wall through temporal separation of this LTG-mediated autolysis from synthesis, likely independent of previously hypothesized protein-protein interactions. By systematically re-introducing LTGs back into LTG-deficient mutants, we have also created a platform for empirically organizing diverse LTGs into functional families where previously they could only be categorized by their biochemistry. For example, one functional group includes LTGs that are specifically required for clearance of PG debris during septation and daughter cell separation. Another group likely contributes to the elusive, and now confirmed essential, function of releasing newly synthesized PG from the inner membrane. This platform is far from exhaustion and will continue to yield critical information about lytic transglycosylases and their relationship with cell wall homeostasis.


Molecular Biology of The Cell

Molecular Biology of The Cell
Author: Bruce Alberts
Publisher:
Total Pages: 0
Release: 2002
Genre: Cytology
ISBN: 9780815332183

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Prokaryotic Cytoskeletons

Prokaryotic Cytoskeletons
Author: Jan Löwe
Publisher: Springer
Total Pages: 450
Release: 2017-05-11
Genre: Science
ISBN: 331953047X

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This book describes the structures and functions of active protein filaments, found in bacteria and archaea, and now known to perform crucial roles in cell division and intra-cellular motility, as well as being essential for controlling cell shape and growth. These roles are possible because the cytoskeletal and cytomotive filaments provide long range order from small subunits. Studies of these filaments are therefore of central importance to understanding prokaryotic cell biology. The wide variation in subunit and polymer structure and its relationship with the range of functions also provide important insights into cell evolution, including the emergence of eukaryotic cells. Individual chapters, written by leading researchers, review the great advances made in the past 20-25 years, and still ongoing, to discover the architectures, dynamics and roles of filaments found in relevant model organisms. Others describe one of the families of dynamic filaments found in many species. The most common types of filament are deeply related to eukaryotic cytoskeletal proteins, notably actin and tubulin that polymerise and depolymerise under the control of nucleotide hydrolysis. Related systems are found to perform a variety of roles, depending on the organisms. Surprisingly, prokaryotes all lack the molecular motors associated with eukaryotic F-actin and microtubules. Archaea, but not bacteria, also have active filaments related to the eukaryotic ESCRT system. Non-dynamic fibres, including intermediate filament-like structures, are known to occur in some bacteria.. Details of known filament structures are discussed and related to what has been established about their molecular mechanisms, including current controversies. The final chapter covers the use of some of these dynamic filaments in Systems Biology research. The level of information in all chapters is suitable both for active researchers and for advanced students in courses involving bacterial or archaeal physiology, molecular microbiology, structural cell biology, molecular motility or evolution. Chapter 3 of this book is open access under a CC BY 4.0 license.


Bacterial Cell Structure

Bacterial Cell Structure
Author: Howard John Rogers
Publisher:
Total Pages: 104
Release: 1983
Genre: Science
ISBN:

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Membrane Biogenesis

Membrane Biogenesis
Author: Jos A.F. Op den Kamp
Publisher: Springer Science & Business Media
Total Pages: 474
Release: 2013-06-29
Genre: Science
ISBN: 3642731848

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Many individual aspects of the dynamics and assembly of biological membranes have been studied in great detail. Cell biological approaches, advanced genetics, biophysics and biochemistry have greatly contributed to an increase in our knowledge in this field.lt is obvious however, that the three major membrane constituents - lipids, proteins and carbohydrates- are studied, in most cases separately and that a coherent overview of the various aspects of membrane biogenesis is not readily available. The NATO Advanced Study Institute on "New Perspectives in the Dynamics of Assembly of Biomembranes" intended to provide such an overview: it was set up to teach students and specialists the achievements obtained in the various research areas and to try and integrate the numerous aspects of membrane assembly into a coherent framework. The articles in here reflect this. Statting with detailed contributions on phospholipid structure, dynamics, organization and biogenesis, an up to date overview of the basic, lipidic backbone of biomembranes is given. Extensive progress is made in the research on membrane protein biosynthesis. In particular the post- and co-translational modification processes of proteins, the mechanisms of protein translocation and the sorting mechanisms which are necessary to direct proteins to their final, intra - or extracellular destination have been characterized in detail. Modern genetic approaches were indispensable in this research area: gene cloning, hybrid protein construction, site directed mutagenesis and sequencing techniques elucidated many functional aspects of specific nucleic acid and amino acid sequences.