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Application of Transport-reaction Modeling to Constrain Biogeochemical Processes in Marine Sediments

Application of Transport-reaction Modeling to Constrain Biogeochemical Processes in Marine Sediments
Author: Wei-Li Hong
Publisher:
Total Pages: 176
Release: 2014
Genre: Carbon cycle (Biogeochemistry)
ISBN:

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Quantifying the mass transport through marine sediments, and the geochemical response to such flow with numerical models has become a common and powerful approach for geochemical data interpretation. In this dissertation, I developed and applied transport-reaction models to unravel complex and interdependent reactions involving carbon, sulfur and silica transformations in shallow marine sediments, and the impact of physical (mass transport deposits) and depositional events (volcanic ash input) on the overall geochemical state of the system. Carbon cycling in the gas hydrate bearing sediments of the Ulleung Basin was quantified using both box and kinetic modeling approaches. The box model balances mass, flux, and carbon isotopes of carbon (Chapter 2), and led to a better understanding of how methane is cycled in the marine sediments of this area. This effort demonstrates the significance of CO2 reduction, a previously overlooked reaction. The picture of reaction network derived from this work serves as the foundation for a transport-reaction model (Chapter 3). The kinetic model results revealed a very different biogeochemistry between two distinct fluid-flow environments. At sites where transport is predominantly diffusive (non-chimney environments), organic matter decomposition is the dominant process driving production of methane, dissolved inorganic carbon (DIC) and consumption of sulfate. In contrast, anaerobic oxidation of methane (AOM) drives both carbon and sulfur cycles in the advective settings characterized by acoustic chimneys indicative of gas transport. I show that methane produced within the model domain, through CO2 reduction and methanogenesis, fuels AOM in the non-chimney sites while AOM is primarily induced by methane from external sources at the chimney sites. A simulation of the system evolution from a non-chimney to a chimney condition was developed by increasing the bottom methane supply to an originally diffusion-controlled site. Results from this exercise show that the higher methane flux leads to a higher AOM activity, and enhanced organic matter decomposition through methanogenesis. Organic carbon cycling is also affected by changes in the depositional environment, as shown by application of the kinetic model to the sediments from the Krishna-Godavary (K-G) basin along the eastern Indian margin (Chapter 4). Proximity to large rivers results in the widespread occurrence of mass transport deposits (MTD) throughout the basin. In this work, MTD is defined as a fluidized sediment block whose pore water composition is identical to sea water value to reflect the homogenization process during sediment transport. The pore water sulfate and ammonium profiles measured at seven sites drilled in the K-G Basin during the NGHP-01 expedition were simulated to provide a quantitative description of how MTDs can affect geochemistry profiles, not only for sulfate and ammonium but potentially all pore water species. This model provides reliable estimates of the MTDs thickness, the time elapsed after the most recent event, and the organoclastic sulfate reduction rate at these seven sites. A transport-reaction modeling approach was also applied to investigate the silica diagenetic reactions fueled by volcanic ash decomposition in Shikuko Basin, Nankai Trough (Chapter 5). The model developed for this setting reproduces a silica diagenetic boundary (SDB) at each site, which is defined by marked decreases in reactive volcanic ash, pore water silica and potassium. Volcanic ash alteration was constrained by modeling pore water 87Sr/86Sr profiles. Below the SDB, formation of clinoptilolite consumes potassium and regulates the extension of amorphous silica by consuming SiO2(aq). The observed low SiO2(aq) and dissolved potassium in these deep sequences require continuous precipitation of clinoptilolite; however in order to maintain oversaturation of this mineral at the low SiO2(aq) in sediments below the SDB, an increase in pH is required, consistent with pore water observations. Thermal history, rather than temperature alone, controls the inferred reaction network as shown by the convergence of the thermal maturity of sediments at the SDB from all studied sites and is consistent with other locations documented onshore Japan. These results are valuable as we move forward in understanding the mechanisms and consequences of ash alteration in convergent margins worldwide.


Reactive Transport Modeling

Reactive Transport Modeling
Author: Yitian Xiao
Publisher: John Wiley & Sons
Total Pages: 689
Release: 2018-03-14
Genre: Science
ISBN: 1119060028

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Teaches the application of Reactive Transport Modeling (RTM) for subsurface systems in order to expedite the understanding of the behavior of complex geological systems This book lays out the basic principles and approaches of Reactive Transport Modeling (RTM) for surface and subsurface environments, presenting specific workflows and applications. The techniques discussed are being increasingly commonly used in a wide range of research fields, and the information provided covers fundamental theory, practical issues in running reactive transport models, and how to apply techniques in specific areas. The need for RTM in engineered facilities, such as nuclear waste repositories or CO2 storage sites, is ever increasing, because the prediction of the future evolution of these systems has become a legal obligation. With increasing recognition of the power of these approaches, and their widening adoption, comes responsibility to ensure appropriate application of available tools. This book aims to provide the requisite understanding of key aspects of RTM, and in doing so help identify and thus avoid potential pitfalls. Reactive Transport Modeling covers: the application of RTM for CO2 sequestration and geothermal energy development; reservoir quality prediction; modeling diagenesis; modeling geochemical processes in oil & gas production; modeling gas hydrate production; reactive transport in fractured and porous media; reactive transport studies for nuclear waste disposal; reactive flow modeling in hydrothermal systems; and modeling biogeochemical processes. Key features include: A comprehensive reference for scientists and practitioners entering the area of reactive transport modeling (RTM) Presented by internationally known experts in the field Covers fundamental theory, practical issues in running reactive transport models, and hands-on examples for applying techniques in specific areas Teaches readers to appreciate the power of RTM and to stimulate usage and application Reactive Transport Modeling is written for graduate students and researchers in academia, government laboratories, and industry who are interested in applying reactive transport modeling to the topic of their research. The book will also appeal to geochemists, hydrogeologists, geophysicists, earth scientists, environmental engineers, and environmental chemists.


Reactive Transport in Natural Porous Media

Reactive Transport in Natural Porous Media
Author: Babak Shafei
Publisher:
Total Pages:
Release: 2012
Genre: Biogeochemistry
ISBN:

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Reactive Transport Models (RTMs) provide quantitative tools to analyze the interaction between transport and biogeochemical processes in subsurface environments such as aquatic sediments and groundwater flow. A tremendous amount of research has shown the role and impact of scaling behavior of the reactive systems which stems from geologic heterogeneity. Depending on the kinetics of the reactions, different types of formulations have been proposed to describe reactions in RTMs. We introduce a novel quantitative criteria on the range of validity of local equilibrium assumption (LEA) in aquatic sediments with irreversible heterogeneous sorption reactions. Then we present a one-dimensional (1-D) early diagenetic module, MATSEDLAB, developed in MATLAB. The module provides templates for representing the reaction network, boundary conditions and transport regime, which the user can modify to fit the particular early diagenetic model configuration of interest. We describe the theoretical background of the model and introduce the MATLAB pdepe solver, followed by calibration and validation of the model by a number of theoretical and empirical applications. Finally, we introduce a new pore-scale model using lattice Boltzmann (LB) approach. It uses an iterative scheme for the chemical transport-reaction part and recent advances in the development of optimal advection-diffusion solvers within the lattice Boltzmann method framework. We present results for the dissolution and precipitation of a porous medium under different dynamical conditions, varying reaction rates and the ratio of advective to diffusive transport (Pe, Peclet number) for linear reactions. The final set of calculations considers sorption reactions on a heterogeneous porous medium. We use our model to investigate the effect of heterogeneity on the pore-scale distribution of sorption sites and the competition between three different sorption reactions.


Treatise on Geochemistry

Treatise on Geochemistry
Author:
Publisher: Newnes
Total Pages: 14787
Release: 2013-10-19
Genre: Science
ISBN: 0080983006

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This extensively updated new edition of the widely acclaimed Treatise on Geochemistry has increased its coverage beyond the wide range of geochemical subject areas in the first edition, with five new volumes which include: the history of the atmosphere, geochemistry of mineral deposits, archaeology and anthropology, organic geochemistry and analytical geochemistry. In addition, the original Volume 1 on "Meteorites, Comets, and Planets" was expanded into two separate volumes dealing with meteorites and planets, respectively. These additions increased the number of volumes in the Treatise from 9 to 15 with the index/appendices volume remaining as the last volume (Volume 16). Each of the original volumes was scrutinized by the appropriate volume editors, with respect to necessary revisions as well as additions and deletions. As a result, 27% were republished without major changes, 66% were revised and 126 new chapters were added. In a many-faceted field such as Geochemistry, explaining and understanding how one sub-field relates to another is key. Instructors will find the complete overviews with extensive cross-referencing useful additions to their course packs and students will benefit from the contextual organization of the subject matter Six new volumes added and 66% updated from 1st edition. The Editors of this work have taken every measure to include the many suggestions received from readers and ensure comprehensiveness of coverage and added value in this 2nd edition The esteemed Board of Volume Editors and Editors-in-Chief worked cohesively to ensure a uniform and consistent approach to the content, which is an amazing accomplishment for a 15-volume work (16 volumes including index volume)!


Reactive Transport in Porous Media

Reactive Transport in Porous Media
Author: Peter C. Lichtner
Publisher: Walter de Gruyter GmbH & Co KG
Total Pages: 452
Release: 2018-12-17
Genre: Science
ISBN: 1501509799

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Volume 34 of Reviews in Mineralogy focuses on methods to describe the extent and consequences of reactive flow and transport in natural subsurface systems. Since the field of reactive transport within the Earth Sciences is a highly multidisciplinary area of research, including geochemistry, geology, physics, chemistry, hydrology, and engineering, this book is an attempt to some extent bridge the gap between these different disciplines. This volume contains the contributions presented at a short course held in Golden, Colorado, October 25-27, 1996 in conjunction with the Mineralogical Society of America's (MSA) Annual Meeting with the Geological Society of America in Denver, Colorado.


Diagenetic Models and Their Implementation

Diagenetic Models and Their Implementation
Author: Bernard P. Boudreau
Publisher: Springer Verlag
Total Pages: 414
Release: 2011-10-05
Genre: Science
ISBN: 9783642643996

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The study of sedimentary chemistry and its associated processes is becoming far more mathematical. This new emphasis is being driven by pressures originating from both basic research and field applications. There is a growing desire to gain a quantitative understanding of the reasons for the natural chemical changes observed in sediments as they are buried. Past textbooks have not emphasized the steps necessary to develop transport-reaction (diagenetic) models themselves nor methods for their solution. This book attempts to correct this situation by presenting a detailed account of model formulation by explaining some useful solution techniques. The choice of material illustrates methods that are simple to explain and implement, yet powerful enough to attack even the most complicated diagenetic problems. Computer programs that implement and illustrate the numerical methods are also made available.