A Study Of Genes Involved In The Formation Of The Heterocyst Spacing Pattern In The Cyanobacterium Nostoc Punctiforme And Their Roles In The Symbiotic Growth State PDF Download

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Characterization of Genes Involved in Heterocyst Differentiation and Pattern Formation in the Cyanobacterium Anabaena Sp. Strain PCC 7120

Characterization of Genes Involved in Heterocyst Differentiation and Pattern Formation in the Cyanobacterium Anabaena Sp. Strain PCC 7120
Author: Pritty B. Borthakur
Publisher:
Total Pages: 194
Release: 2008
Genre: Anabaena
ISBN:

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The goal of this research was to understand regulation of heterocyst differentiation in Anabaena sp. strain PCC 7120 by characterizing regulatory genes for heterocyst formation and their mutants. Anabaena is a filamentous cyanobacterium that forms specialized cells for nitrogen fixation, called heterocysts, which differentiate from vegetative cells at intervals of 10--12 cells. Two genes, patS and hetN, are known to suppress the differentiation of vegetative cells into heterocysts for establishing a de novo pattern and maintaining a pattern of heterocysts along the filament. A mutant, UHM100, was created to study the function of both genes by deleting patS and making expression of hetN conditional. This study has established that PatS and HetN are members of two separate heterocyst suppression pathways. In absence of nitrogen, inactivation of both patS and hetN increases heterocyst differentiation to nearly 100%, giving rise to a phenotype called 'multiple contiguous heterocysts' (Mch). UHM100 has an Mch phenotype even in the presence of combined nitrogen, which usually suppresses heterocyst differentiation. In absence of both patS and hetN, the expression of hetR, a master regulator of heterocyst differentiation, was observed in ~55% cells and was asynchronous. The distribution of heterocysts next to a vegetative cell in UHM 100 was found to be nonrandom. These results suggest that besides PatS and HetN, there are other factors that influence pattern formation in Anabaena PCC 7120. A heterocyst-deficient (Hef) spontaneous mutant, NSM6, was isolated from UHM 100. A novel gene, alr9018, from the Anabaena Epsilon plasmid complemented NSM6 and restored the Mch phenotype of this mutant. Transconjugants of Anabaena PCC 7120 containing the cloned alr9018 gene fixed 50% more N2 than PCC 7120, suggesting that multiple copies of alr9018 enhance heterocyst development. This is the first report showing that the Epsilon plasmid of Anabaena PCC 7120 contains genes involved in heterocyst differentiation. Expression of alr9018 was observed in both vegetative cells and heterocysts. Similar to alr9018, hetR could also restore the Mch phenotype in NSM6, suggesting functional similarity between a1r9018 and hetR. The Alr9018 protein contains an NTPase domain, which is a characteristic of proteins involved in signal transduction.


Transcriptional Regulation of Heterocyst Development in Anabaena Sp. Strain PCC 7120

Transcriptional Regulation of Heterocyst Development in Anabaena Sp. Strain PCC 7120
Author: Britt Lee Flaherty
Publisher:
Total Pages: 125
Release: 2012
Genre:
ISBN: 9781267832580

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Fixed nitrogen is a limited resource for growth in the environment and the fixation of atmospheric nitrogen is vital to nutrient cycling and growth. Cyanobacteria are a group of photosynthetic bacteria that evolved 4.5 billion years ago to harvest sunlight as energy. Cyanobacteria have since evolved a wide array of metabolic capabilities over time, including the ability to fix atmospheric nitrogen. Anabaena sp. strain PCC 7120, hereafter Anabaena, is a species of cyanobacteria that fixes atmospheric N2 into ammonia by forming specialized nitrogen-fixing cells called heterocysts. Heterocysts form only in the absence of a source of fixed nitrogen and are evenly spaced along a filament of Anabaena cells. We studied the gene expression networks that regulate heterocyst development through deep sequencing, employing both RNA-seq on a nitrogen-deprived culture as well as ChIP-seq on key transcription factors involved in heterocyst development. Deep sequencing gave us a global view of gene expression in response to nitrogen deprivation in Anabaena. Our RNA-seq work identified new genes involved in heterocyst development, mapped operon structure and transcript length, and discovered abundant antisense transcription in the genome. In particular, we identified antisense transcription in the coding region of the gene nblA, which codes for a small peptide that triggers the proteolysis of the photosynthetic machinery in response to nutrient stress. Furthermore, we used ChIP-seq to identify the regulon of two transcription factors, HetR and DevH, in response to nitrogen deprivation. Our work on HetR, a transcription factor with known roles in regulating heterocyst development, identified many new HetR targets, including genes involved in HetR's role during nitrogen deprivation and during vegetative cell growth. Our work on DevH, a transcription factor required for forming the heterocyst-specific cell wall, also identified new DevH targets, including many genes involved in cell wall formation and transcriptional regulators. This work adds to our understanding of transcriptional networks that regulate heterocyst development in Anabaena. Furthermore, our study provides insight into gene structure and transcriptional regulation in cyanobacteria as a whole.


The Biology of Cyanobacteria

The Biology of Cyanobacteria
Author: N. G. Carr
Publisher: Univ of California Press
Total Pages: 708
Release: 1982-01-01
Genre: Science
ISBN: 9780520047174

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Cyanobacteria in Symbiosis

Cyanobacteria in Symbiosis
Author: A.N. Rai
Publisher: Springer Science & Business Media
Total Pages: 357
Release: 2007-05-08
Genre: Science
ISBN: 0306480050

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Cyanobacterial symbioses are no longer regarded as mere oddities but as important components of the biosphere, occurring both in terrestrial and aquatic habitats worldwide. It is becoming apparent that they can enter into symbiosis with a wider variety of organisms than hitherto known, and there are many more still to be discovered, particularly in marine environments. The chapters cover cyanobacterial symbioses with plants (algae, bryophytes, Azolla, cycads, Gunnera), cyanobacterial symbioses in marine environments, lichens, Nostoc-Geosiphon (a fungus closely related to arbuscular mycorrhiza fungi) symbiosis, and artificial associations of cyanobacteria with economically important plants. In addition, cyanobiont diversity, sensing-signalling, and evolutionary aspects of the symbiosis are dealt with. Renowned experts actively involved in research on cyanobacterial symbioses deal with ecological, physiological, biochemical, molecular, and applied aspects of all known cyanobacterial symbioses. This volume on cyanobacteria in symbiosis complements the two earlier volumes on cyanobacteria published by Kluwer (Molecular Biology of Cyanobacteria, edited by D.A. Bryant and Ecology of Cyanobacteria, edited by B.A. Whitton and M. Potts). Together, the three volumes provide the most comprehensive treatment of cyanobacterial literature as a whole. The book will serve as a valuable reference work and text for teaching and research in the field of plant-microbe interactions and nitrogen fixation.


Handbook of Cyanobacteria

Handbook of Cyanobacteria
Author: T. A. Sarma
Publisher: CRC Press
Total Pages: 814
Release: 2012-12-18
Genre: Science
ISBN: 1578088003

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This handbook acquaints readers with the exciting developments in various areas of cyanobacterial research in the backdrop of the publication of complete genome sequence of the cyanobacterium Synechocystis sp. strain PCC 6803 in 1996. It begins with a summary of the current knowledge on the taxonomy, phylogeny and evolution of cyanobacteria followed by the sequenced genomes, differentiation of akinetes and heterocyst. The book considers mechanisms of cellular movements (gliding, swimming and twitching motions) exhibited by various cyanobacteria in order to adjust to their environmental niches and the operation of the circadian rhythms. It covers cyanobacterial symbiosis, cyanophages and cyanobacterial toxins, followed by a discussion on stress responses (salinity, temperature, desiccation and oxidation). A comprehensive account on the developments in all these spheres has been presented in a lucid style with the required background information, molecular techniques employed and models proposed. This handbook constitutes the first such book written by a single author at a level and depth for graduate and research students in botany and microbiology.


Plant Programmed Cell Death

Plant Programmed Cell Death
Author: Arunika N. Gunawardena
Publisher: Springer
Total Pages: 306
Release: 2015-10-08
Genre: Science
ISBN: 3319210335

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Programmed cell death (PCD) is a genetically encoded, active process which results in the death of individual cells, tissues, or whole organs. PCD plays an essential role in plant development and defense, and occurs throughout a plant’s lifecycle from the death of the embryonic suspensor to leaf and floral organ senescence. In plant biology, PCD is a relatively new research area, however, as its fundamental importance is further recognized, publications in the area are beginning to increase significantly. The field currently has few foundational reference books and there is a critical need for books that summarizes recent findings in this important area. This book contains chapters written by several of the world’s leading researchers in PCD. This book will be invaluable for PhD or graduate students, or for scientists and researchers entering the field. Established researchers will also find this timely work useful as an up-to-date overview of this fascinating research area.