A Landscape Approach To Determining And Predicting Juvenile Coho Salmon Oncorhynchus Kisutch Movement Timing And Growth Patterns Prior To Ocean Entry PDF Download

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A Landscape Approach to Determining and Predicting Juvenile Coho Salmon (Oncorhynchus Kisutch) Movement Timing and Growth Patterns Prior to Ocean Entry

A Landscape Approach to Determining and Predicting Juvenile Coho Salmon (Oncorhynchus Kisutch) Movement Timing and Growth Patterns Prior to Ocean Entry
Author:
Publisher:
Total Pages: 124
Release: 2016
Genre: Coho salmon
ISBN:

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Coho salmon (Oncorhynchus kisutch) rely on unique habitats during the winter season, which may dictate how much individuals may growth and when migration from freshwater rearing habitat to the ocean occurs. Here I analyze movement timing and growth patterns for coho salmon through a field-based study and a literature review. For the field portion, I examined hatchery-stocked juvenile coho salmon across four stream basins in the Russian River watershed, California to determine the relative importance of climate, landscape, and fish size metrics in predicting movement and growth patterns over a winter rearing and spring smolt outmigration time period (December 2014-June 2015). I observed three unique movement strategies: winter parr movement, spring smolt movement, and inter-tributary movement. Movement was predicted in relation to daily temperature and precipitation, followed by in-stream and upslope basin conditions in random forest modeling. Specifically, fish that moved later were associated with basins that contained higher productivity and low-gradient floodplain habitats, while fish that moved earlier came from streams that lacked invertebrate prey and had limited low-gradient rearing habitat. Fish size and timing of movement were the primary predictors of growth, with relatively larger fish in the spring growing faster than fish that were relatively smaller prior to winter. These relationships suggest that hatchery-release fish are still highly influenced by environmental conditions once released, especially in terms of initial seasonal movement, and that watershed conditions should be considered when utilizing hatchery-rearing programs to supplement wild fish populations. In North America, coho salmon populations are distributed from Alaska through California, and may exhibit unique movement and growth patterns in relationship to population-scale vulnerability (Endangered Species Act listing), basin area, and availability and types of rearing habitat. For the second part of my thesis, I conducted a literature review to assess what factors are commonly considered in predicting movement and growth patterns for these fish, as well as the types (season and life stage) and number of movement strategies reported. Eighteen studies were summarized, of which sixteen identified unique movement strategies, ranging from one to four. Despite a wide range of basin areas and latitudes, winter parr and spring smolt movements were commonly observed, with authors primarily relating these behaviors to in-stream habitat and fish size metrics. Additionally, growth was linked positively and primarily with off-channel winter rearing, which may outweigh the importance of fish size in predicting growth when high quality rearing habitats are available during the winter season. Recognizing movement timing diversity and its drivers can help recover threatened coho salmon populations. More widely distributed populations may have unique phenotypic expressions based on localized genetic and environmental interactions, increasing diversity and overall stability across the population, a concept known as the portfolio effect. Understanding fish-habitat relationships can aid recovery efforts by providing a framework of climatic and watershed conditions that support unique behaviors, even in already severely limited populations.


Juvenile Coho Salmon Movement, Growth and Survival in a Coastal Basin of Southern Oregon

Juvenile Coho Salmon Movement, Growth and Survival in a Coastal Basin of Southern Oregon
Author: Adam D. Weybright
Publisher:
Total Pages: 110
Release: 2011
Genre: Coho salmon
ISBN:

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Juvenile salmonids display highly variable spatial and temporal movement patterns that are influenced by density dependent (e.g., competition, predation) and density independent (e.g., genetics, stream discharge, physical habitat conditions) factors. The effects of these factors differ with fish life history stage, but will ultimately affect how salmonids utilize freshwater nursery habitats and influence their size at smolting. Although juvenile coho salmon (Oncorhynchus kisutch) (Walbaum 1792) movement patterns and their relationships with body mass have been previously examined, the temporal scale considered in most studies has been within individual seasonal periods. In this study, we monitored the movement of PIT tagged juvenile coho salmon throughout the period of freshwater residence in an entire southern Oregon coastal basin to identify the prevalent sedentary and mobile strategies these fish may adopt and to examine possible relationships between those strategies and fish body mass, growth and survival. Specific objectives include: 1) to describe juvenile coho salmon movement strategies and patterns during the freshwater residence period; 2) to determine the relative proportions of juvenile coho salmon that exhibit each movement strategy; 3) to establish whether juvenile coho salmon body mass and growth rates are related with a set of habitat variables recorded during this study; 4) to determine whether coho salmon body mass or growth rates are related to movement strategy; and 5) to evaluate whether winter survival of juvenile coho salmon is associated with movement strategy. Results revealed seasonally and spatially variable movement. More than half of coho salmon tracked throughout the period of freshwater residence exhibited movement behavior that differed between summer and winter seasons. Within seasonal periods, coho salmon in tidally affected reaches exhibited greater prevalence of mobile behavior relative to those in riverine reaches. Regression analysis indicated coho biomass density, habitat unit structural complexity and size at tagging were important in predicting summer growth of coho salmon. Juvenile coho salmon that were mobile during summer were either larger or no different in body mass in early summer relative to fish that exhibited sedentary behavior. Similarly, no consistent differences were observed between sedentary and mobile coho salmon in regards to summer growth. Coho salmon that were sedentary in summer and winter experienced higher apparent winter survival than mobile fish in each season, though the reach in which an individual resided at the start of winter appeared to also affect survival. Coho salmon residing in the tide gate reservoir reach and mainstem headwater reaches experienced greatest apparent winter survival. These results indicate that juvenile coho salmon movement within a stream basin is spatially and temporally variable and that mobility does not necessarily indicate inferior competitive ability. In a broader context, variable movement patterns reflect the capacity for plastic behavior in salmonids and this research demonstrates the importance of maintaining seasonally diverse freshwater and estuarine nursery habitats for juvenile fish.


A Time- and State-based Approach to Estimate Winter Movement and Survival of Juvenile Coho Salmon (Oncorhynchus Kisutch) in Freshwater Creek, California

A Time- and State-based Approach to Estimate Winter Movement and Survival of Juvenile Coho Salmon (Oncorhynchus Kisutch) in Freshwater Creek, California
Author: Nicholas Van Vleet
Publisher:
Total Pages: 101
Release: 2019
Genre: Coho salmon
ISBN:

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Accounting for life history diversity and overwinter survival of juvenile Coho Salmon is important to inform restoration and recovery efforts for this threatened species. Multiple seaward migration patterns of Coho Salmon have been identified, including spring fry migrants, fall and winter parr migrants, and spring smolt migrants. Previous studies have indicated that spring smolt migrants have low overwinter survival rates while they are rearing in upstream habitats, suggesting that freshwater overwinter survival may be one factor that limits smolt production. However, previous research did not account for the early emigration of fall and winter parr migrants from the study area, which most likely negatively biased their overwinter survival estimates. Furthermore, previous mark-recapture methods aggregated continuous detection data into course seasonal scales in order to estimate movement and survival. In an effort to refine previous methodology, I developed a multi-state model that allowed for estimation of early emigration and survival rates in space and time by having weekly time-varying occasions paired with discrete spatial states.


Overwinter Survival and Movement of Juvenile Coho Salmon (Oncorhynchus Kisutch) in Relation to Large Woody Debris and Low-velocity Habitat in Northern California Streams

Overwinter Survival and Movement of Juvenile Coho Salmon (Oncorhynchus Kisutch) in Relation to Large Woody Debris and Low-velocity Habitat in Northern California Streams
Author: John D. Deibner-Hanson
Publisher:
Total Pages: 96
Release: 2019
Genre: Coho salmon
ISBN:

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Some studies suggest that Coho Salmon populations are limited by overwinter survival as a result of insufficient winter habitat. While many small-scale projects aim to define reach and basin-level habitat requirements for Coho Salmon, large-scale studies that assess multiple independent populations remain few. For my research, I quantified large woody debris (LWD) by volume and low-velocity rearing habitat (LVH) as percent area in three coastal watersheds of similar size in northern California to untangle the relationships between Coho Salmon overwinter survival, emigration timing and specific winter habitats. I used mark-recapture techniques with PIT tags to formulate Cormack-Jolly-Seber models for each of three years (2013-2015) to (1) estimate apparent overwinter survival of juvenile Coho Salmon populations, (2) determine to what extent outmigration timing varies among basins, and (3) evaluate the relationships between reach-specific survival, movement and winter habitat. LWD volume ranged from 47.8 to 109.9 cubic meters per kilometer among stream reaches while LVH area spanned from 9.3% to 23.6% of total stream area per reach. Effects of LWD on apparent overwinter survival and early emigration were absent during all three years of the study. Effects of LVH were not observed during 2013 and 2014. In 2015, LVH correlated positively with apparent overwinter survival and negatively with emigration. Larger Coho Salmon had higher apparent overwinter survival rates than small fish, whereas smaller fish had greater emigrations rates before spring. Mean apparent overwinter survival varied by basin from 0.052 to 0.567 but basins maintained consistency across years. Early emigration rates ranged even further by basin (0.023-0.773). Variation in both apparent overwinter survival and early emigration was much greater among basins than within basins. A lot remains to be learned regarding how habitat affects the migratory behavior of Coho Salmon in California and these results suggest the effects may vary significantly by stream. The drastic life history differences observed in neighboring Coho Salmon populations demonstrate the plasticity in a species once thought to be relatively inflexible. Moving forward, incorporating multi-basin approaches should be considered when evaluating freshwater survival and movement to inform large-scale restoration and conservation.


Movement of Juvenile Coho Salmon (Onchorynchus Kisutch) and Dolly Varden Char (Salvelinus Malma) in Headwater Rearing Habitat in the Kenai Lowlands of South-central Alaska

Movement of Juvenile Coho Salmon (Onchorynchus Kisutch) and Dolly Varden Char (Salvelinus Malma) in Headwater Rearing Habitat in the Kenai Lowlands of South-central Alaska
Author: Kristin L. Berger
Publisher:
Total Pages: 74
Release:
Genre: Chars
ISBN:

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"Patterns of juvenile salmonid movement in natal streams provide insight into factors driving movement and ways to develop proactive conservation practices for wild salmon populations. This work expands on years of ongoing investigations for a comprehensive understanding of landscape and habitat characteristics important for salmon success. This study ties into an existing model for headwater streams in the Kenai Lowlands which predicts the presence of juvenile coho salmon and Dolly Varden by age-class based on catchment topography, wetland geomorphology, water chemistry, substrate composition, channel morphology, and macroinvertebrate and fish communities. We tagged nearly 1,000 juvenile coho salmon (Onchorynchus kisutch) and Dolly Varden char (Salvelinus malma) with passive integrated transponder (PIT) tags in headwater streams with varying gradients and habitat conditions in the Kenai Lowlands, Alaska from May to October 2012, and tracked their movement with stationary antenna arrays spaced approximately 0.8-3.5 km apart. Our results demonstrate that juvenile salmonids moved considerably in rearing habitat during non-migratory periods (e.g. seaward migrations), conceivably in an exploratory nature to find optimal habitat. Larger juveniles appeared to move more than smaller juveniles. Our results suggest that stream temperature, stage and time of year may be correlated to summer movement in headwater streams. Most fish were detected again within their site of capture moving 5-10 m, and 23% of tagged fish moved distances of 0.8-3.5 km to another site. This novel finding is important, because we now know that fish are moving between habitats at different reach levels. The movement of fish between reaches and the utilization of different habitats emphasizes the importance of habitat heterogeneity and connectivity between diverse shelter and foraging habitats during pre-smolt stages. Further investigation into habitat use by juvenile salmonids during different seasons may clarify species- and age-class specific patterns of movement."--Abstract.


Variation in the Timing of Coho Salmon (Oncorhynchus Kisutch) Migration and Spawning Relative to River Discharge and Temperature

Variation in the Timing of Coho Salmon (Oncorhynchus Kisutch) Migration and Spawning Relative to River Discharge and Temperature
Author: Rachel LovellFord
Publisher:
Total Pages: 146
Release: 2013
Genre: Coho salmon
ISBN:

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Coho salmon (Oncorhynchus kisutch) migration and spawning are unique components of the salmon life cycle because they require synchrony of behavior with other individuals as well as with acceptable fluvial conditions. As with other organisms that exhibit group mating behavior, it is likely that environmental cues trigger coho salmon movement to spawning grounds. These cues may also provide usable habitat for migration and spawning. River discharge, temperature, and length of day have long been assumed to be the environmental cues which trigger migration and spawning of coho salmon as coho return within the same season each year to spawn. Hatchery studies have also shown that the timing of reproductive behavior is heritable. If this heritability is determined by the fluvial conditions of the spawning grounds, then a predictable relationship should exist between reproductive behavior and the hydrologic and thermal regimes. Surprisingly, no defensible correlations between discharge thresholds and spawning or migrating activity have been identified for naturally reproducing coho salmon. Thermal, velocity, and depth limitations have been identified for coho salmon, but these values have not been examined in combination or within the context of a hydrologic and thermal regime. This study compares interannual patterns in the timing of coho mid-river migration in the North Umqua (180 km up river from the estuary) and the initiation of spawn timing in the Smith River basins (Oregon) with river discharge and water temperature data to ascertain whether these behaviors are driven by fluvial conditions. Additionally, we used this data to identify the window over which most migration and spawning takes place in our test systems. On the North Umpqua, coho salmon mid-river migration initiated (first 5% of migrants) after summer peak temperatures and following a threshold average daily temperature of 18° C, but before fall storm events occurred. In most years, approximately 75% of the migrating coho salmon have moved past the Winchester Dam before fall storms initiated and when discharge remained less than the 11 year average for the month of November, more similar to summer than winter flow levels. Additionally, characteristic lengths and numbers of peaks within the distribution of annual migrations were attributable to the generational cohort that the migration belonged to despite the similarity in population size across all years. These patterns in the distribution of generational cohorts suggest an inherited timing response as well as highlight cohorts which may contain diminished sub-populations. The initiation of coho salmon spawning appears limited both by a thermal threshold of 12° C in all basins, as well as by a minimal discharge threshold, which is unique to each stream. Continued spawning activity occurs as discharge remains elevated from fall levels. It is also notable that there was no statistical difference in the date of the initiation of spawning within each basin in a given year or across years at a given site. Together, these studies highlight the important role that the coho salmon genome plays in reproductive timing as well as the ways that fluvial thresholds limit reproductive behavior in time. Coho have survived because of their genome has been resilient when faced with environmental change. Future work should consider variability in fluvial conditions relative to coho salmon phenotypic plasticity over time. Coho salmon phenotypic plasticity will determine whether the rate of change of the hydrologic and thermal regimes important to coho salmon survival outpaces the coho's ability to adapt. This study contributed to this future work by establishing baseline relationships between the behavior of a threatened species and measurable environmental thresholds.


Bioenergetics Individual Based Model Explorations of Juvenile Coho Salmon Growth During Their First Summer on the Oregon Shelf

Bioenergetics Individual Based Model Explorations of Juvenile Coho Salmon Growth During Their First Summer on the Oregon Shelf
Author: Brendan Alexander Reser
Publisher:
Total Pages: 202
Release: 2010
Genre: Bioenergetics
ISBN:

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Salmon survival and eventual recruitment success have long been thought to be determined within the first summer following ocean migration. Juvenile growth during this period is largely influenced by ocean conditions such as temperature, prey availability, abundance, and quality. Shifts in these conditions due to climatic perturbations are particularly prevalent in systems controlled by seasonal upwelling events, and consequently can have large influences on summer growth, overwintering survival, and eventual cohort recruitment. Individual Based Simulations (IBM) were performed using a modified Wisconsin bioenergetics model on juvenile coho salmon (Oncorhynchus kisutch) using forcing fields characteristic of the Oregon coast from 41.75°N to 45°N during late spring to summer (June 1st to August 15) of 2000 and 2002. The bioenergetics model used consumption estimated from prey fields developed from June and August U.S. GLOBEC cruises, and a multiple prey foraging model. The consumption rates were converted to realized growth of the juvenile coho using the standard Wisconsin model parameterization for coho salmon, except that respiration components were modified to coho specific rates using a functional relation of Trudel and Welch (2005). Temperatures for the simulations were provided by a Regional Ocean Model System simulation of the Oregon and Washington shelf environment physics, that had bias in temperatures removed using observed SeaSoar field temperatures from June and August cruises. Observed weights of juvenile coho salmon were used to establish the initial weight ranges and to determine the model's suitability and accuracy to describe juvenile and 'jack' growth. Recognizing that several of the dominant prey types of juvenile coho (from stomach content analysis) may be significantly underestimated by the plankton net sample density estimates available from the cruises, we examined through simulation several scenarios that made density corrections to these prey types. The simulations were successful in capturing differences in the juvenile coho growth patterns of 2000 and 2002. In 2000, the spring transition was relatively late, upwelling was delayed, and the mesozooplankton community was comprised of smaller individuals, compared to 2002. The overall lower regional prey biomass and the shift to smaller size plankton in 2000 resulted in delayed coho growth despite a larger mean initial smolt weight. Base case simulations of coho in 2002 (starting with 75g WW juveniles) had 22.9% higher final weights than did fish simulated using 2000 temperatures and prey fields. This indicates substantial potential for interannual variability in growth. However, the base case simulations assume that juvenile coho encounter with prey is random, whereas it is more likely that coho are somewhat able to optimally exploit their prey environment by preferentially locating and feeding in regions have higher prey densities, or better quality prey. We examined several different intensities of "optimal feeding", where the juvenile coho preferentially fed in regions having higher prey densities. Juveniles that were able (through unspecified behavioral mechanisms) to find regions of high prey density grew much faster during their first summer in the ocean than did fish that randomly encountered prey. Optimal feeding by individual juvenile coho salmon resulted in final sizes of fish in 2000 and 2002 that were similar, as the maximum prey density patches in 2000 were higher than in 2002.