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Solid-state NMR Spectroscopic Studies of Proteins and Small Molecules in Phospholipid Membranes

Solid-state NMR Spectroscopic Studies of Proteins and Small Molecules in Phospholipid Membranes
Author: Shidong Chu
Publisher:
Total Pages: 121
Release: 2009
Genre: Membrane lipids
ISBN:

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2H, 31P, and 1H-MAS solid-state NMR spectroscopic techniques were used to elucidate the interaction between sorbate, a widely used antibacterial agent, and the lipid bilayers. In the membrane association process, sorbate are most likely interacting with the headgroups, rather than inserting deeply into the acyl chains region. Phospholamban (PLB) regulates calcium transport across the membranes via an inhibitory interaction with SERCA, the cardiac isoform of Ca2+-ATPase. Phosphorylation of PLB relieves the inhibition in a mechanism that is not completely understood. 15N chemical shift changes of ~20 ppm upon phosphorylation were observed in site-specific 15N-labeled PLB and phosphorylated PLB embedded in oriented lipid bilayers, indicating that phosphorylation of PLB alters the structural properties of the cytoplasmic domain with respect to the lipid bilayers. 2H and 15N NMR spectra of wild-type PLB and a N27A PLB mutant reconstituted into lipid bilayers indicate that the N27A mutation does not significantly change the side-chain or backbone dynamics of the transmembrane and cytoplasmic domains. However, dynamic changes are observed for the hinge region, in which greater mobility is observed for the CD3-labeled Ala24 N27A-PLB. This may help to understand why the N27A mutation in the hinge region of PLB leads to heart failures. A new approach for determining the membrane immersion depth of a spin-labeled probe was developed using paramagnetic relaxation enhancement (PRE) in solid-sate NMR spectroscopy. A DOXYL spin label was placed at different depths in the phospholipid bilayers and the resulting enhancements of the 31P spin-lattice relaxation (T1) times were measured and used to calculate the immersion depth. The 31P T1 values decreases steadily as the spin label moves closer to the surface and as the concentration of the spin-labeled lipids increases. These trends of enhanced relaxation vs. the position and the concentration of spin-labels indicate that PRE induced by the DOXYL spin label are significant to determine long distances over the whole depth range of the membranes. This approach may be a powerful biophysical method for measuring membrane protein immersion depth.


Solid-state NMR Spectroscopic Studies on Phospholamban and Saposin C Proteins in Phospholipid Membranes

Solid-state NMR Spectroscopic Studies on Phospholamban and Saposin C Proteins in Phospholipid Membranes
Author: Shadi Abu-Baker
Publisher:
Total Pages: 195
Release: 2007
Genre:
ISBN:

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Solid-state NMR spectroscopic techniques were used to investigate two significant membrane proteins, phospholamban (PLB) and Saposin C (Sap C). For the first protein, analysis of the 2H and 31P solid-state NMR data of chemically synthesized WT-PLB and its phophorylated form (P-PLB) in 1-palmitoyl-2-oleoyl-sn-glycero-phosphocholine (POPC) multilamellar vesicles (MLVs) indicates that the interaction of P-PLB with POPC bilayers was less significant when compared to PLB. Moreover, the secondary structure using 13C=O site-specific isotopically labeled Ala15-PLB and Ala15-P-PLB in POPC bilayers suggests that this residue, located in the cytoplasmic domain, is a part of an alpha-helical structure for both PLB and P-PLB. Also, 2H NMR spectra of site-specific CD3-labeled WT-PLB and P-PLB at Ala15 exhibit one strong isotropic spectral component indicating the presence of additional motions as well as faster side-chain reorientations when compared with Leu51 and Ala24 representing the transmembrane domain. Conversely, the 15N Ala11 NMR spectrum of WT-PLB located on the cytoplasmic domain yields two dynamic components (powder pattern component and isotropic component) implying that the backbone dynamics of this residue exists in two populations: one that is immobile, and another which is motionally averaged on the NMR timescale. Upon phosphorylation, the 15N mobile component contribution increases. The POPC 15N NMR spectra indicate that the transmembrane domain has a tilt angle of 13 +/- 6° with respect to the mechanically oriented POPC bilayer normal and that the cytoplasmic domain of WT-PLB lies on the surface of the phospholipid bilayers. For the second protein, 2H and 31P solid-state NMR data of Sap C in dioleoylphosphatidylglycerol (DOPG) and dioleoylphosphatidylserine (DOPS) mixed bilayers indicates that Sap C is not inserting deep into the bilayers and that it has no preference to DOPS over DOPG. Finally, several other solid-state NMR spectroscopic experiments indicate that protonated Sap C disturbs 1-palmitoyl-2-oleoyl-sn-glycero-3-[phospho-L-serine] (POPS) lipid bilayers and not the neutral POPC lipids.


Solid-state NMR Studies of Phospholipid Model Membranes and Membrane-associated Macromolecules

Solid-state NMR Studies of Phospholipid Model Membranes and Membrane-associated Macromolecules
Author: Jun-Xia Lu
Publisher:
Total Pages: 159
Release: 2007
Genre:
ISBN: 9780549030195

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The effect of cholesterol on the bicelles was further studied utilizing both solid-state 2H NMR and the EPR spin labeling approach. The results indicate a higher molecular ordering of the lipids and a higher alignment transition temperature of the bicelles in the presence of cholesterol.


Membrane Protein Structure Determination

Membrane Protein Structure Determination
Author: Jean-Jacques Lacapère
Publisher: Methods in Molecular Biology
Total Pages: 482
Release: 2010-08-06
Genre: Science
ISBN:

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Membrane proteins, representing nearly 40% of all proteins, are key components of cells involved in many cellular processes, yet only a small number of their structures have been determined. Membrane Protein Structure Determination: Methods and Protocols presents many detailed techniques for membrane protein structure determination used today by bringing together contributions from top experts in the field. Divided into five convenient sections, the book covers various strategies to purify membrane proteins, approaches to get three dimensional crystals and solve the structure by x-ray diffraction, possibilities to gain structural information for a membrane protein using electron microscopy observations, recent advances in nuclear magnetic resonance (NMR), and molecular modelling strategies that can be used either to get membrane protein structures or to move from atomic structure to a dynamic understanding of a molecular functioning mechanism. Written in the highly successful Methods in Molecular BiologyTM series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Comprehensive and easy to use, Membrane Protein Structure Determination: Methods and Protocols serves as an ideal reference for scientists seeking to further our knowledge of these vital and versatile proteins as well as our overall understanding of the complicated world of cell biology.


Phospholipids Handbook

Phospholipids Handbook
Author: Gregor Cevc
Publisher: CRC Press
Total Pages: 1162
Release: 1993-08-02
Genre: Science
ISBN: 9780824790509

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Employing a multidisciplinary approach to phospholipid research, this work catalogues the current knowledge of this class of molecules and details the general, chemical, physical and structural properties of phospholipid monolayers and bilayers. Phospholipid applications are also covered.


Peptide-Lipid Interactions

Peptide-Lipid Interactions
Author: Sidney A. Simon
Publisher: Academic Press
Total Pages: 606
Release: 2002-11-13
Genre: Science
ISBN: 0080925855

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This volume contains a comprehensive overview of peptide-lipid interactions by leading researchers. The first part covers theoretical concepts, experimental considerations, and thermodynamics. The second part presents new results obtained through site-directed EPR, electron microscopy, NMR, isothermal calorimetry, and fluorescence quenching. The final part covers problems of biological interest, including signal transduction, membrane transport, fusion, and adhesion. Key Features * world-renowned experts * state-of-the-art experimental methods * monolayers, bilayers, biological membranes * theoretical aspects and computer simulations * rafts * synaptic transmission * membrane fusion * signal transduction


Study of Bacteriorhodopsin in a Controlled Lipid Environment

Study of Bacteriorhodopsin in a Controlled Lipid Environment
Author: Vivien Yeh
Publisher: Springer
Total Pages: 139
Release: 2018-10-26
Genre: Science
ISBN: 9811312389

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This book focuses on the study of how the properties of nanodiscs, such as lipid composition and size, influence the function of the embedding integral membrane protein, bacteriorhodopsin. The author performed systematic studies to show that the lipid composition and the charge of the hydrophobic head and the structure of hydrophilic tails affect the photocycle pathway of bacteriorhodopsin, which is closely associated with its proton-pumping activity. Furthermore, the author demonstrated a highly efficient method for extracting membrane proteins directly from the biological membrane, preserving protein conformation, function and essential native lipids. This book demonstrates optimization and sample preparation, and presents practical methods of preparing membrane protein-embedded nanodisc samples for biophysical studies, which benefit structural and functional studies in the field of membrane protein characterization, both.


Biomembranes

Biomembranes
Author: Robert B. Gennis
Publisher: Springer Science & Business Media
Total Pages: 549
Release: 2013-04-17
Genre: Science
ISBN: 1475720653

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New textbooks at all levels of chemistry appear with great regularity. Some fields like basic biochemistry, organic reaction mechanisms, and chemical thermody namics are well represented by many excellent texts, and new or revised editions are published sufficiently often to keep up with progress in research. However, some areas of chemistry, especially many of those taught at the graduate level, suffer from a real lack of up-to-date textbooks. The most serious needs occur in fields that are rapidly changing. Textbooks in these subjects usually have to be written by scientists actually involved in the research which is advancing the field. It is not often easy to persuade such individuals to set time aside to help spread the knowledge they have accumulated. Our goal, in this series, is to pinpoint areas of chemistry where recent progress has outpaced what is covered in any available textbooks, and then seek out and persuade experts in these fields to produce relatively concise but instructive introductions to their fields. These should serve the needs of one semester or one quarter graduate courses in chemistry and biochemistry. In some cases, the availability of texts in active research areas should help stimulate the creation of new courses.


Membrane Spectroscopy

Membrane Spectroscopy
Author: E. Grell
Publisher: Springer Science & Business Media
Total Pages: 509
Release: 2012-12-06
Genre: Science
ISBN: 3642815375

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The last 10 years have seen an enormous growth in our understanding of the molecular organisation of biological membranes. Experimental methods have been devised to meas ure the translational and rotational mobility of lipids and proteins, thereby furnishing a quantitative basis for the concept of membrane fluidity. Likewise, the asymmetry of bi layer membranes as evidenced by the asymmetric insertion of proteins and lipids has been put on firm experimental ground. At higher molecular resolution it has been possible to provide a detailed pi2ture of the molecular conformation and dynamics of lipids and, to some extent, even of small peptides embedded in a bilayer matrix. Many of these achieve ments would not have been possible without the application of modem spectroscopic methods. Since these techniques are scattered in a variety of specialized textbooks the present monograph attempts to describe the key spectroscopic methods employed in present-day membrane research at an intermediate level. There is no question that the elusive detailed structure of the biological membrane demands a multiplicity of experi mental approaches and that no single spectroscopic method can cover the full range of physical phenomena encountered in a membrane. Much confusion in the literature has arisen by undue generalizations without considering the frequency range or other limi tations of the methods employed. It is to be hoped that the present monograph with its comprehensive description of most modem spectroscopic techniques, will contribute to- .


In-cell NMR Spectroscopy

In-cell NMR Spectroscopy
Author: Yutaka Ito
Publisher: Royal Society of Chemistry
Total Pages: 322
Release: 2019-12-09
Genre: Science
ISBN: 1839160934

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In-cell NMR spectroscopy is a relatively new field. Despite its short history, recent in-cell NMR-related publications in major journals indicate that this method is receiving significant general attention. This book provides the first informative work specifically focused on in-cell NMR. It details the historical background of in-cell NMR, host cells for in-cell NMR studies, methods for in-cell biological techniques and NMR spectroscopy, applications, and future perspectives. Researchers in biochemistry, biophysics, molecular biology, cell biology, structural biology as well as NMR analysts interested in biological applications will all find this book valuable reading.