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Relevance of Spatio-temporal Heterogeneities in Modelling Geomicrobial Reactive Systems

Relevance of Spatio-temporal Heterogeneities in Modelling Geomicrobial Reactive Systems
Author: Swamini Khurana
Publisher:
Total Pages: 0
Release: 2022*
Genre:
ISBN:

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The subsurface compartment of the Earth's Critical Zone is one of the biggest stores of carbon and nitrogen, and provides habitat for 95% of the global estimates of microbial biomass. These microbes mediate the transformation of carbon and nitrogen in the subsurface. But, their contribution to biogeochemical cycles is not yet estimated on a global scale due to the inaccessibility and the spatio-temporal heterogeneity of the subsurface. The relevance of these sub-scale spatio-temporal heterogeneities with respect to carbon and nitrogen cycling rates is not understood. This in turn affects interpretation of field data and formulation of suitable modelling studies. In this work, I addressed this gap by assessing the effect of spatio-temporal heterogeneities on microbial mediated transformation of carbon and nitrogen using a numerical modeling approach. I set up spatially heterogeneous simulation domains representative of the subsurface and introduced a network of microbial mediated reactions in these domains. I subjected these domains to temporal dynamics. I, then, quantified the impact of spatial heterogeneity on microbial mediated nutrient cycling in the subsurface and quantified the impact of temporal dynamics in the saturated zone of the subsurface. Consolidating the results, I proposed that indicators such as travel time of conservative solutes can be used to identify four types of reactive systems that respond to spatio-temporal heterogeneities in the subsurface: Reaction dominated systems, reaction influenced systems, transport influenced systems and transport dominated systems. The approach used in this thesis is applicable, transferrable, and suitably scalable across different sites. It can, thus, be used to fill a critical gap in the global biogeochemical budgets. It can also assist in forming a predictive understanding of the behavior of heterogeneous reactive systems in temporally dynamic conditions, resulting in secured access to groundwater.


Early Diagenesis

Early Diagenesis
Author: Robert A. Berner
Publisher: Princeton University Press
Total Pages: 260
Release: 1980-08-21
Genre: Science
ISBN: 9780691082608

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This book focuses mainly on the chemical composition of interstitial waters of sediments. Chapter 2 presents the basic theory used throughout the rest of the book in terms of a general diagenetic equation. Chapters 3,4,and 5 provides detailed discussion of each of the terms in general diagenetic equation as well as presentations of data. Chapters 6,7 and 8 gives examples of diagenetic calculation using the theory developed earlier.


Geochemical and Biogeochemical Reaction Modeling

Geochemical and Biogeochemical Reaction Modeling
Author: Craig M. Bethke
Publisher: Cambridge University Press
Total Pages: 564
Release: 2010-12-09
Genre: Science
ISBN: 1139468324

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This book provides a comprehensive overview of reaction processes in the Earth's crust and on its surface, both in the laboratory and in the field. A clear exposition of the underlying equations and calculation techniques is balanced by a large number of fully worked examples. The book uses The Geochemist's Workbench® modeling software, developed by the author and already installed at over 1000 universities and research facilities worldwide. Since publication of the first edition, the field of reaction modeling has continued to grow and find increasingly broad application. In particular, the description of microbial activity, surface chemistry, and redox chemistry within reaction models has become broader and more rigorous. These areas are covered in detail in this new edition, which was originally published in 2007. This text is written for graduate students and academic researchers in the fields of geochemistry, environmental engineering, contaminant hydrology, geomicrobiology, and numerical modeling.


The Individual Microbe: Single-Cell Analysis and Agent-Based Modelling

The Individual Microbe: Single-Cell Analysis and Agent-Based Modelling
Author: Johan H. J. Leveau
Publisher: Frontiers Media SA
Total Pages: 187
Release: 2019-02-19
Genre:
ISBN: 2889457494

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Recent technological advances in single-cell microbiology, using flow cytometry, microfluidics, x-ray fluorescence microprobes, and single-cell -omics, allow for the observation of individuals within populations. Simultaneously, individual-based models (or more generally agent-based models) allow for individual microbes to be simulated. Bridging these techniques forms the foundation of individual-based ecology of microbes (µIBE). µIBE has elucidated genetic and phenotypic heterogeneity that has important consequences for a number of human interests, including antibiotic or biocide resistance, the productivity and stability of industrial fermentations, the efficacy of food preservatives, and the potential of pathogens to cause disease. Individual-based models can help us to understand how these sets of traits of individual microbes influence the above. This eBook compiles all publications from a recent Research Topic in Frontiers in Microbiology. It features recent research where individual observational and/or modelling techniques are applied to gain unique insights into the ecology of microorganisms. The Research Topic “The Individual Microbe: Single-Cell Analysis and Agent-Based Modelling” arose from the 2016 @ASM conference of the same name hosted by the American Society for Microbiology at its headquarters in Washington, D.C. We are grateful to ASM for funding and hosting this conference.


Lake Pavin

Lake Pavin
Author: Télesphore Sime-Ngando
Publisher: Springer
Total Pages: 422
Release: 2016-10-31
Genre: Science
ISBN: 3319399616

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This book represents the first multidisciplinary scientific work on a deep volcanic maar lake in comparison with other similar temperate lakes. The syntheses of the main characteristics of Lake Pavin are, for the first time, set in a firmer footing comparative approach, encompassing regional, national, European and international aquatic science contexts. It is a unique lake because of its permanently anoxic monimolimnion, and furthermore, because of its small surface area, its substantially low human influence, and by the fact that it does not have a river inflow. The book reflects the scientific research done on the general limnology, history, origin, volcanology and geological environment as well as on the geochemistry and biogeochemical cycles. Other chapters focus on the biology and microbial ecology whereas the sedimentology and paleolimnology are also given attention. This volume will be of special interest to researchers and advanced students, primarily in the fields of limnology, biogeochemistry, and aquatic ecology.


Characterization, Modeling, Monitoring, and Remediation of Fractured Rock

Characterization, Modeling, Monitoring, and Remediation of Fractured Rock
Author: National Academies of Sciences, Engineering, and Medicine
Publisher: National Academies Press
Total Pages: 177
Release: 2021-01-29
Genre: Science
ISBN: 0309373727

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Fractured rock is the host or foundation for innumerable engineered structures related to energy, water, waste, and transportation. Characterizing, modeling, and monitoring fractured rock sites is critical to the functioning of those infrastructure, as well as to optimizing resource recovery and contaminant management. Characterization, Modeling, Monitoring, and Remediation of Fractured Rock examines the state of practice and state of art in the characterization of fractured rock and the chemical and biological processes related to subsurface contaminant fate and transport. This report examines new developments, knowledge, and approaches to engineering at fractured rock sites since the publication of the 1996 National Research Council report Rock Fractures and Fluid Flow: Contemporary Understanding and Fluid Flow. Fundamental understanding of the physical nature of fractured rock has changed little since 1996, but many new characterization tools have been developed, and there is now greater appreciation for the importance of chemical and biological processes that can occur in the fractured rock environment. The findings of Characterization, Modeling, Monitoring, and Remediation of Fractured Rock can be applied to all types of engineered infrastructure, but especially to engineered repositories for buried or stored waste and to fractured rock sites that have been contaminated as a result of past disposal or other practices. The recommendations of this report are intended to help the practitioner, researcher, and decision maker take a more interdisciplinary approach to engineering in the fractured rock environment. This report describes how existing tools-some only recently developed-can be used to increase the accuracy and reliability of engineering design and management given the interacting forces of nature. With an interdisciplinary approach, it is possible to conceptualize and model the fractured rock environment with acceptable levels of uncertainty and reliability, and to design systems that maximize remediation and long-term performance. Better scientific understanding could inform regulations, policies, and implementation guidelines related to infrastructure development and operations. The recommendations for research and applications to enhance practice of this book make it a valuable resource for students and practitioners in this field.


Multiphase Flow in Permeable Media

Multiphase Flow in Permeable Media
Author: Martin J. Blunt
Publisher: Cambridge University Press
Total Pages: 503
Release: 2017-02-16
Genre: Science
ISBN: 1107093465

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This book provides a fundamental description of multiphase fluid flow through porous rock, based on understanding movement at the pore, or microscopic, scale.


Landscapes on the Edge

Landscapes on the Edge
Author: National Research Council
Publisher: National Academies Press
Total Pages: 180
Release: 2010-04-25
Genre: Science
ISBN: 0309140242

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During geologic spans of time, Earth's shifting tectonic plates, atmosphere, freezing water, thawing ice, flowing rivers, and evolving life have shaped Earth's surface features. The resulting hills, mountains, valleys, and plains shelter ecosystems that interact with all life and provide a record of Earth surface processes that extend back through Earth's history. Despite rapidly growing scientific knowledge of Earth surface interactions, and the increasing availability of new monitoring technologies, there is still little understanding of how these processes generate and degrade landscapes. Landscapes on the Edge identifies nine grand challenges in this emerging field of study and proposes four high-priority research initiatives. The book poses questions about how our planet's past can tell us about its future, how landscapes record climate and tectonics, and how Earth surface science can contribute to developing a sustainable living surface for future generations.


In Situ Bioremediation

In Situ Bioremediation
Author: National Research Council
Publisher: National Academies Press
Total Pages: 225
Release: 1993-02-01
Genre: Science
ISBN: 0309048966

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In situ bioremediationâ€"the use of microorganisms for on-site removal of contaminantsâ€"is potentially cheaper, faster, and safer than conventional cleanup methods. But in situ bioremediation is also clouded in uncertainty, controversy, and mistrust. This volume from the National Research Council provides direction for decisionmakers and offers detailed and readable explanations of: the processes involved in in situ bioremediation, circumstances in which it is best used, and methods of measurement, field testing, and modeling to evaluate the results of bioremediation projects. Bioremediation experts representing academic research, field practice, regulation, and industry provide accessible information and case examples; they explore how in situ bioremediation works, how it has developed since its first commercial use in 1972, and what research and education efforts are recommended for the future. The volume includes a series of perspective papers. The book will be immediately useful to policymakers, regulators, bioremediation practitioners and purchasers, environmental groups, concerned citizens, faculty, and students.