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Modeling and Simulation of Capsules and Biological Cells

Modeling and Simulation of Capsules and Biological Cells
Author: C. Pozrikidis
Publisher: CRC Press
Total Pages: 344
Release: 2003-05-28
Genre: Mathematics
ISBN: 0203503953

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In the past three decades, considerable progress has been made in the mathematical analysis, modelling, and simulation of the fluid dynamics of liquid capsules and biological cells, and interest in this area is now at an all-time high. This book features a collection of chapters contributed by acknowledged leaders in the field who explore topics re


Modeling and Simulation of Capsules and Biological Cells

Modeling and Simulation of Capsules and Biological Cells
Author: C. Pozrikidis
Publisher: Chapman and Hall/CRC
Total Pages: 344
Release: 2003-05-28
Genre: Mathematics
ISBN: 9781135440626

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In the past three decades, considerable progress has been made in the mathematical analysis, modelling, and simulation of the fluid dynamics of liquid capsules and biological cells, and interest in this area is now at an all-time high. This book features a collection of chapters contributed by acknowledged leaders in the field who explore topics related to the modeling and numerical simulation of capsule fluid dynamics and cell biomechanics. While providing an outstanding overview of the state of the art in selected areas of the subject, the authors also present the results of their own original research. A companion Web site holds useful links and additional information related to the topics discussed.


Three Dimensional Computational Modeling and Simulation of Biological Cells and Capsules

Three Dimensional Computational Modeling and Simulation of Biological Cells and Capsules
Author:
Publisher:
Total Pages: 175
Release: 2008
Genre: Blood cells
ISBN:

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Three-dimensional computational modeling and simulation are presented on the flow-induced motion of highly deformable particles which are representative of biological cells, such as red blood cells. We focus on the dynamics of capsules, that is, liquid drops surrounded by hyperelastic membranes. Unlike liquid drops where the fluid-fluid interface is characterized by isotropic surface tension, that for a capsule is governed by more complex constitutive laws. The numerical method is based on a front-tracking/immersed boundary method forcapsule deformation, and a finite-difference/fourier-transform method for the flow solver. The methodology is able to consider large deformation of capsules, capsule-capsule interaction, semi-dense suspension, and inertial effect. Using the simulation tool, we address a sequence of problems: (a) Capsule motion in wall-bounded pressure-driven flows: The motion of a capsule in a channel flow is investigated in absence of inertia and under large deformation. It is shown that a deformable capsule slowly drifts lateral to the flow and away from the wall while moving axially with the flow. Based on the theory of small deformation, and the present numerical results, an approximate expression for migration velocity under large deformation is developed. (b) Binary interaction in wall-bounded pressure-driven flows: Hydrodynamic interaction between two capsules in a channel flow is investigated in absence of inertia. Effect of wall proximity on the shear-induced diffusion process, in which one capsule rolls over the other, is studied for spherical and ellipsoidal resting shapes. (c) Effect of inertia on binary collision: Hydrodynamic interaction between two capsules in a linear shear flow is investigated in presence of inertia. The shear-induced diffusion process is shown to be absent. Instead, a new interaction mode is found in which the capsules engage in spiraling motion. (d) Simulation of semi-dense suspension: We then consider direct numerical simulations (DNS) of suspension of multiple capsules of spherical and biconcave resting shapes. Detailed analysis of the numerical results and their relevance to in vitro blood flow are presented. It is shown that the two-phase model of blood in microvessels underpredicts the DNS flow rate. We proceed to develop a three-layer model based on the microrheology extracted from the DNS, and show that it accurately predicts the DNS velocity.


Computational Hydrodynamics of Capsules and Biological Cells

Computational Hydrodynamics of Capsules and Biological Cells
Author: Constantine Pozrikidis
Publisher: CRC Press
Total Pages: 0
Release: 2010-06-02
Genre: Mathematics
ISBN: 9781439820056

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Spanning biological, mathematical, computational, and engineering sciences, computational biofluiddynamics addresses a diverse family of problems involving fluid flow inside and around living organisms, organs, tissue, biological cells, and other biological materials. Computational Hydrodynamics of Capsules and Biological Cells provides a comprehensive, rigorous, and current introduction to the fundamental concepts, mathematical formulation, alternative approaches, and predictions of this evolving field. In the first several chapters on boundary-element, boundary-integral, and immersed-boundary methods, the book covers the flow-induced deformation of idealized two-dimensional red blood cells in Stokes flow, capsules with spherical unstressed shapes based on direct and variational formulations, and cellular flow in domains with complex geometry. It also presents simulations of microscopic hemodynamics and hemorheology as well as results on the deformation of capsules and cells in dilute and dense suspensions. The book then describes a discrete membrane model where a surface network of viscoelastic links emulates the spectrin network of the cytoskeleton, before presenting a novel two-dimensional model of red and white blood cell motion. The final chapter discusses the numerical simulation of platelet motion near a wall representing injured tissue. This volume provides a roadmap to the current state of the art in computational cellular mechanics and biofluiddynamics. It also indicates areas for further work on mathematical formulation and numerical implementation and identifies physiological problems that need to be addressed in future research. MATLAB® code and other data are available at http://dehesa.freeshell.org/CC2


Modelling Organs, Tissues, Cells and Devices

Modelling Organs, Tissues, Cells and Devices
Author: Socrates Dokos
Publisher: Springer
Total Pages: 504
Release: 2017-03-08
Genre: Technology & Engineering
ISBN: 3642548016

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This book presents a theoretical and practical overview of computational modeling in bioengineering, focusing on a range of applications including electrical stimulation of neural and cardiac tissue, implantable drug delivery, cancer therapy, biomechanics, cardiovascular dynamics, as well as fluid-structure interaction for modelling of organs, tissues, cells and devices. It covers the basic principles of modeling and simulation with ordinary and partial differential equations using MATLAB and COMSOL Multiphysics numerical software. The target audience primarily comprises postgraduate students and researchers, but the book may also be beneficial for practitioners in the medical device industry.


Computational Hydrodynamics of Capsules and Biological Cells

Computational Hydrodynamics of Capsules and Biological Cells
Author: Constantine Pozrikidis
Publisher: CRC Press
Total Pages: 328
Release: 2010-06-02
Genre: Mathematics
ISBN: 1439820066

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Spanning biological, mathematical, computational, and engineering sciences, computational biofluiddynamics addresses a diverse family of problems involving fluid flow inside and around living organisms, organs, tissue, biological cells, and other biological materials. Computational Hydrodynamics of Capsules and Biological Cells provides a comprehen


Single-Cell-Based Models in Biology and Medicine

Single-Cell-Based Models in Biology and Medicine
Author: Alexander Anderson
Publisher: Springer Science & Business Media
Total Pages: 346
Release: 2007-06-22
Genre: Mathematics
ISBN: 3764381019

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Aimed at postgraduate students in a variety of biology-related disciplines, this volume presents a collection of mathematical and computational single-cell-based models and their application. The main sections cover four general model groupings: hybrid cellular automata, cellular potts, lattice-free cells, and viscoelastic cells. Each section is introduced by a discussion of the applicability of the particular modelling approach and its advantages and disadvantages, which will make the book suitable for students starting research in mathematical biology as well as scientists modelling multicellular processes.


Computational Exome and Genome Analysis

Computational Exome and Genome Analysis
Author: Peter N. Robinson
Publisher: CRC Press
Total Pages: 444
Release: 2017-09-13
Genre: Computers
ISBN: 1351650815

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Exome and genome sequencing are revolutionizing medical research and diagnostics, but the computational analysis of the data has become an extremely heterogeneous and often challenging area of bioinformatics. Computational Exome and Genome Analysis provides a practical introduction to all of the major areas in the field, enabling readers to develop a comprehensive understanding of the sequencing process and the entire computational analysis pipeline.


An Introduction to Physical Oncology

An Introduction to Physical Oncology
Author: Vittorio Cristini
Publisher: CRC Press
Total Pages: 303
Release: 2017-06-26
Genre: Mathematics
ISBN: 1315356880

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Physical oncology has the potential to revolutionize cancer research and treatment. The fundamental rationale behind this approach is that physical processes, such as transport mechanisms for drug molecules within tissue and forces exchanged by cancer cells with tissue, may play an equally important role as biological processes in influencing progression and treatment outcome. This book introduces the emerging field of physical oncology to a general audience, with a focus on recent breakthroughs that help in the design and discovery of more effective cancer treatments. It describes how novel mathematical models of physical transport processes incorporate patient tissue and imaging data routinely produced in the clinic to predict the efficacy of many cancer treatment approaches, including chemotherapy and radiation therapy. By helping to identify which therapies would be most beneficial for an individual patient, and quantifying their effects prior to actual implementation in the clinic, physical oncology allows doctors to design treatment regimens customized to each patient’s clinical needs, significantly altering the current clinical approach to cancer treatment and improving the outcomes for patients.