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Environmental Genomics

Environmental Genomics
Author: C. Cristofre Martin
Publisher: Springer Science & Business Media
Total Pages: 363
Release: 2008-01-18
Genre: Science
ISBN: 1588297772

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Here is a manual for an environmental scientist who wishes to embrace genomics to answer environmental questions. The volume covers: gene expression profiling, whole genome and chromosome mutation detection, and methods to assay genome diversity and polymorphisms within a particular environment. This book provides a systematic framework for determining environmental impact and ensuring human health and the sustainability of natural populations.


Insight on Environmental Genomics

Insight on Environmental Genomics
Author: Denis Faure
Publisher: ISTE Press - Elsevier
Total Pages: 0
Release: 2016-06-22
Genre: Science
ISBN: 9781785481468

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Bringing together the latest methodological and scientific progress in the various research areas in the field of Environmental Genomics, this book discusses the characterization of the structure and dynamics of life, the study of the evolution and adaptation of genes and genomes, the analysis of degraded and/or old DNA, and the functional and genomic ecology of populations and communities. It also considers access to the production and sharing of NGS data and the quality of this data. As the product of the collective discussion of the active French scientific community, the book presents not only the latest technologies in the development of new sequencing methods, but also the resulting issues, challenges and prospects, in order to identify those aspects with the greatest potential for modeling and exploring the function of ecosystems.


Microbial Environmental Genomics (MEG)

Microbial Environmental Genomics (MEG)
Author: Francis Martin
Publisher: Springer Nature
Total Pages: 370
Release: 2022-12-15
Genre: Science
ISBN: 1071628712

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This volume guides researchers on how to characterize, image rare, and hitherto unknown taxa and their interactions, to identify new functions and biomolecules and to understand how environmental changes condition the activity and the response of the organisms living with us and in our environment. Chapters cover different organism types (i.e., archaea, bacteria, fungi, protest, microfauna and microeukaryotes) and propose detailed protocols to produce high quality DNA, to analyse active microbial communities directly involved in complex interactions or processes through stable isotope probing, to identify and characterize of new functional genes, to image in situ interactions and to apply bioinformatics analysis tools to complex metagenomic or RNAseq sequence data. Written in the successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, and notes on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Microbial Environmental Genomics (MEG): Methods and Protocols, Second Edition aims to serve as a primary research reference for researchers in microbiology working to in the expanding field of molecular ecology and environmental genomics.


Ecological Genomics

Ecological Genomics
Author: Christian R. Landry
Publisher: Springer Science & Business Media
Total Pages: 358
Release: 2013-11-25
Genre: Science
ISBN: 9400773471

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Researchers in the field of ecological genomics aim to determine how a genome or a population of genomes interacts with its environment across ecological and evolutionary timescales. Ecological genomics is trans-disciplinary by nature. Ecologists have turned to genomics to be able to elucidate the mechanistic bases of the biodiversity their research tries to understand. Genomicists have turned to ecology in order to better explain the functional cellular and molecular variation they observed in their model organisms. We provide an advanced-level book that covers this recent research and proposes future development for this field. A synthesis of the field of ecological genomics emerges from this volume. Ecological Genomics covers a wide array of organisms (microbes, plants and animals) in order to be able to identify central concepts that motivate and derive from recent investigations in different branches of the tree of life. Ecological Genomics covers 3 fields of research that have most benefited from the recent technological and conceptual developments in the field of ecological genomics: the study of life-history evolution and its impact of genome architectures; the study of the genomic bases of phenotypic plasticity and the study of the genomic bases of adaptation and speciation.


Applied Environmental Genomics

Applied Environmental Genomics
Author: Oliver F... Berry
Publisher: CSIRO PUBLISHING
Total Pages: 708
Release: 2023-12-01
Genre: Nature
ISBN: 1486314945

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DNA is the essence of life and the original ‘big data’. New technologies are allowing scientists to access and make sense of this information like never before, and they are using it to solve the world’s greatest environmental challenges. Applied Environmental Genomics synthesises the latest and most exciting uses of genomic technologies for environmental science and management. With an emphasis on diversity of applications and real-world demonstrations, leading researchers have contributed detailed chapters on innovative approaches to obtaining critical management-relevant information about the natural world. These chapters are complemented by perspective sections written by environmental managers who describe their experiences using genomics to support evidence-based decisions. Ideal for students, researchers and professionals working in natural resource management and policy, Applied Environmental Genomics is a comprehensive introduction to a fast-moving field that is transforming the practice of environmental management, with profound relevance to industry, government and the public.


Insight on Environmental Genomics

Insight on Environmental Genomics
Author: Denis Faure
Publisher: Elsevier
Total Pages: 174
Release: 2016-07-11
Genre: Science
ISBN: 0081010915

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Bringing together the latest methodological and scientific progress in the various research areas in the field of Environmental Genomics, this book discusses the characterization of the structure and dynamics of life, the study of the evolution and adaptation of genes and genomes, the analysis of degraded and/or old DNA, and the functional and genomic ecology of populations and communities. It also considers access to the production and sharing of NGS data and the quality of this data. As the product of the collective discussion of the active French scientific community, the book presents not only the latest technologies in the development of new sequencing methods, but also the resulting issues, challenges and prospects, in order to identify those aspects with the greatest potential for modeling and exploring the function of ecosystems. Includes recent updates from the field of environmental genomics Provides details of advances of methods and perspectives of their use Contains a multidisciplinary overview of the environmental sciences including taxonomy, ecology, evolution, and diversity Focuses on the impact of recent technology advances in high-throughput sequencing


Genomic Approaches in Earth and Environmental Sciences

Genomic Approaches in Earth and Environmental Sciences
Author: Gregory Dick
Publisher: John Wiley & Sons
Total Pages: 176
Release: 2018-05-29
Genre: Science
ISBN: 1118708245

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The first comprehensive synthesis of genomic techniques in earth sciences The past 15 years have witnessed an explosion of DNA sequencing technologies that provide unprecedented insights into biology. Although this technological revolution has been driven by the biomedical sciences, it also offers extraordinary opportunities in the earth and environmental sciences. In particular, the application of "omics" methods (genomics, transcriptomics, proteomics) directly to environmental samples offers exciting new vistas of complex microbial communities and their roles in environmental and geochemical processes. This unique book fills the gap where there exists a lack of resources and infrastructure to educate and train geoscientists about the opportunities, approaches, and analytical methods available in the application of omic technologies to problems in the geosciences. Genomic Approaches in Earth and Environmental Sciences begins by covering the role of microorganisms in earth and environmental processes. It then goes on to discuss how omics approaches provide new windows into geobiological processes. It delves into the DNA sequencing revolution and the impact that genomics has made on the geosciences. The book then discusses the methods used in the field, beginning with an overview of current technologies. After that it offers in-depth coverage of single cell genomics, metagenomics, metatranscriptomics, metaproteomics, and functional approaches, before finishing up with an outlook on the future of the field. The very first synthesis of an important new family of techniques Shows strengths and limitations (both practical and theoretical) of the techniques Deals with both theoretical and laboratory basics Shows use of techniques in a variety of applications, including various aspects of environmental science, geobiology, and evolution Genomic Approaches in Earth and Environmental Sciences is a welcome addition to the library of all earth and environmental scientists and students working within a wide range of subdisciplines.


An Introduction to Ecological Genomics

An Introduction to Ecological Genomics
Author: Nico M. van Straalen
Publisher: Oxford University Press
Total Pages: 374
Release: 2012
Genre: Science
ISBN: 0199594686

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The authors also provide a comparative survey of the properties of genomes (genome size, gene families, synteny, and polymorphism) for prokaryotes as well as the main eukaryotic models.


An Introduction to Ecological Genomics

An Introduction to Ecological Genomics
Author: Nico M. van Straalen
Publisher: OUP Oxford
Total Pages: 374
Release: 2011-10-27
Genre: Science
ISBN: 0191624616

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The genomics revolution has expanded from its origins in molecular biology to impact upon every discipline in the life sciences, including ecology. Several lines of ecological research can now be profitably addressed using genomics technology, including issues of nutrient cycling, population structure, life-history variation, trophic interaction, stress responses, and adaptation to environmental change. This new edition addresses a series of fundamental ecological questions: the relationship between community structure and ecological function in ecosystems; how variation in life-history patterns among species can be explained from interaction between the genome and the environment; the molecular responses to changing and toxic environmental conditions; adaptive phenotypes and their relationship to genetic variation. Each of these questions is evaluated in the light of recent advances in genomics research, paying particular attention to data obtained from sequencing and screening of environmental genomes (metagenomics), microarray-based transcription profiling, gene expression directed by signal-transduction pathways, and the analysis of genomic polymorphisms. The chapters covering these key areas are preceded by discussions of genomics methodology (including an overview of next-generation sequencing technologies) and comparative genomics, and the book concludes with a chapter on integrative approaches such as ecological control analysis. The authors also provide a comparative survey of the properties of genomes (genome size, gene families, synteny, and polymorphism) for prokaryotes as well as the main eukaryotic models. An Introduction to Ecological Genomics incorporates a balance of plant, animal, and microbial examples, and continues to define the new and exciting field of ecological genomics.